RESUMO
The COVID-19 pandemic has caused an unprecedented health and economic crisis, highlighting the importance of developing new molecular tools to monitor and detect SARS-CoV-2. Hence, this study proposed to employ the carrageenan extracted from Gigartina skottsbergii algae as a probe for SARS-CoV-2 virus binding capacity and potential use in molecular methods. G. skottsbergii specimens were collected in the Chilean subantarctic ecoregion, and the carrageenan was extracted -using a modified version of Webber's method-, characterized, and quantified. After 24 h of incubation with an inactivated viral suspension, the carrageenan's capacity to bind SARS-CoV-2 was tested. The probe-bound viral RNA was quantified using the reverse transcription and reverse transcription loop-mediated isothermal amplification (RT-LAMP) methods. Our findings showed that carrageenan extraction from seaweed has a similar spectrum to commercial carrageenan, achieving an excellent proportion of binding to SARS-CoV-2, with a yield of 8.3%. Viral RNA was also detected in the RT-LAMP assay. This study shows, for the first time, the binding capacity of carrageenan extracted from G. skottsbergii, which proved to be a low-cost and highly efficient method of binding to SARS-CoV-2 viral particles.
Assuntos
COVID-19 , SARS-CoV-2 , Humanos , SARS-CoV-2/genética , COVID-19/diagnóstico , Carragenina/química , Sondas Moleculares , Pandemias , Técnicas de Diagnóstico Molecular/métodos , RNA Viral/genética , Técnicas de Amplificação de Ácido Nucleico/métodos , Sensibilidade e EspecificidadeRESUMO
Freshwater ecosystems are important contributors to the global greenhouse gas budget and a comprehensive assessment of their role in the context of global warming is essential. Despite many reports on freshwater ecosystems, relatively little attention has been given so far to those located in the southern hemisphere and our current knowledge is particularly poor regarding the methane cycle in non-perennially glaciated lakes of the maritime Antarctica. We conducted a high-resolution study of the methane and carbon dioxide cycle in a lake of the Fildes Peninsula, King George Island (Lat. 62°S), and a succinct characterization of 10 additional lakes and ponds of the region. The study, done during the ice-free and the ice-seasons, included methane and carbon dioxide exchanges with the atmosphere (both from water and surrounding soils) and the dissolved concentration of these two gases throughout the water column. This characterization was complemented with an ex-situ analysis of the microbial activities involved in the methane cycle, including methanotrophic and methanogenic activities as well as the methane-related marker gene abundance, in water, sediments and surrounding soils. The results showed that, over an annual cycle, the freshwater ecosystems of the region are dominantly autotrophic and that, despite low but omnipresent atmospheric methane emissions, they act as greenhouse gas sinks.
Assuntos
Gases de Efeito Estufa , Lagos , Regiões Antárticas , Dióxido de Carbono/análise , Ecossistema , Gases/análise , Gases de Efeito Estufa/análise , Lagos/análise , Metano/análise , Solo , Água/análiseRESUMO
Freshwater ecosystems are responsible for an important part of the methane (CH4) emissions which are likely to change with global warming. This study aims to evaluate temperature-induced (from 5 to 20⯰C) changes on microbial community structure and methanogenic pathways in five sub-Antarctic lake sediments from Magallanes strait to Cape Horn, Chile. We combined in situ CH4 flux measurements, CH4 production rates (MPRs), gene abundance quantification and microbial community structure analysis (metabarcoding of the 16S rRNA gene). Under unamended conditions, a temperature increase of 5⯰C doubled MPR while microbial community structure was not affected. Stimulation of methanogenesis by methanogenic precursors as acetate and H2/CO2, resulted in an increase of MPRs up to 127-fold and 19-fold, respectively, as well as an enrichment of mcrA-carriers strikingly stronger under acetate amendment. At low temperatures, H2/CO2-derived MPRs were considerably lower (down to 160-fold lower) than the acetate-derived MPRs, but the contribution of hydrogenotrophic methanogenesis increased with temperature. Temperature dependence of MPRs was significantly higher in incubations spiked with H2/CO2 (c. 1.9â¯eV) compared to incubations spiked with acetate or unamended (c. 0.8â¯eV). Temperature was not found to shape the total microbial community structure, that rather exhibited a site-specific variability among the studied lakes. However, the methanogenic archaeal community structure was driven by amended methanogenic precursors with a dominance of Methanobacterium in H2/CO2-based incubations and Methanosarcina in acetate-based incubations. We also suggested the importance of acetogenic H2-production outcompeting hydrogenotrohic methanogenesis especially at low temperatures, further supported by homoacetogen proportion in the microcosm communities. The combination of in situ-, and laboratory-based measurements and molecular approaches indicates that the hydrogenotrophic pathway may become more important with increasing temperatures than the acetoclastic pathway. In a continuously warming environment driven by climate change, such issues are crucial and may receive more attention.
Assuntos
Água Doce , Microbiota , Regiões Antárticas , Chile , RNA Ribossômico 16S/genética , TemperaturaRESUMO
The sub-Antarctic Magellanic ecoregion is a part of the world where ecosystems have been understudied and where the CH4 cycling and emissions in lakes has not ever been reported. To fill that knowledge gap, a lake and a reservoir located at 53°S were selected and studied during three campaigns equally distributed over one year. Among the parameters measured were CH4 and CO2 emissions, as well their dissolved concentrations in the water column, which were determined with high spatial resolution. No ebullition was observed and the CH4 flux ranged from 0.0094 to 4.47mmolm-2d-1 while the CO2 flux ranged from -22.95 to 35.68mmolm-2d-1. Dissolved CH4 concentrations varied over more than four orders of magnitude (0.025-128.75µmolL-1), and the dissolved carbon dioxide ranged from below the detection limit of our method (i.e., 0.15µmolL-1) to 379.09µmolL-1. The high spatial resolution of the methods used enabled the construction of bathymetric maps, surface contour maps of CH4 and CO2 fluxes, and transect contour maps of dissolved oxygen, temperature, and dissolved greenhouse gases. Overall, both lakes were net greenhouse gas producers and were not significantly different from temperate lakes located at a similar northern latitudes (53°N), except that ebullition was never observed in the studied sub-Antarctic lakes.
RESUMO
Samples of four different species of seaweed were collected monthly between October 2000 and March 2001 from the coast of the Strait of Magellan, Chile to establish baseline levels of trace metals (silver, total mercury, nickel, lead, antimony, vanadium and zinc) and to compare the accumulation capacity among species. The algae included in the study were Adenocystis utricularis (n=15); Enteromorpha sp. (n=11), Mazzaella laminarioides (n=12) and Porphyra columbina (n=6). The concentration range of each metal in microg g(-1) dry weight varied as follows: Ag=ND-0.3, Hg=ND-0.02, Ni=ND-12.6, Pb = ND-11.2, Sb=ND-1.97, V=ND-11.34 and Zn=14.10-79. Results showed that levels of Ag, Hg, Ni, Pb, Sb, V and Zn for all species were similar to those found in other studies for non-contaminated areas with very little influence from anthropogenic activity. Also among the four species studied macroalgae Enteromorpha sp. had the highest capacity for metal accumulation and could therefore be considered as a biomonitor for future studies in the area.