RESUMO
Programmed cell death (PCD) is an ordered cell suicide that removes unwanted or damaged cells, playing a role in defense to environmental stresses and pathogen invasion. PCD is component of the life cycle of plants, occurring throughout development from embryogenesis to the death. Metacaspases are cysteine proteases present in plants, fungi, and protists. In certain plant-pathogen interactions, the PCD seems to be mediated by metacaspases. We adopted a comparative genomic approach to identify genes coding for the metacaspases in Viridiplantae. We observed that the metacaspase was divided into types I and II, based on their protein structure. The type I has a metacaspase domain at the C-terminus region, presenting or not a zinc finger motif in the N-terminus region and a prodomain rich in proline. Metacaspase type II does not feature the prodomain and the zinc finger, but has a linker between caspase-like catalytic domains of 20 kDa (p20) and 10 kDa (p10). A high conservation was observed in the zinc finger domain (type I proteins) and in p20 and p10 subunits (types I and II proteins). The phylogeny showed that the metacaspases are divided into three principal groups: type I with and without zinc finger domain and type II metacaspases. The algae and moss are presented as outgroup, suggesting that these three classes of metacaspases originated in the early stages of Viridiplantae, being the absence of the zinc finger domain the ancient condition. The study of metacaspase can clarify their assignment and involvement in plant PCD mechanisms.
Assuntos
Caspases/metabolismo , Família Multigênica , Proteínas de Plantas/metabolismo , Plantas/enzimologia , Estresse Fisiológico , Sequência de Aminoácidos , Apoptose , Sequência de Bases , Caspases/genética , Dados de Sequência Molecular , Proteínas de Plantas/química , Proteínas de Plantas/genética , Plantas/genética , Plantas/metabolismoRESUMO
The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that play a role in programmed cell death (PCD) and other biological processes, such as plant growth and photosynthesis. In the present study, we report the reconstruction of the evolutionary history of the LSD gene family in Viridiplantae. Phylogenetic analysis revealed that the monocot and eudicot genes were distributed along the phylogeny, indicating that the expansion of the family occurred prior to the diversification between these clades. Sequences encoding proteins that present one, two, or three LSD domains formed separate groups. The secondary structure of these different LSD proteins presented a similar composition, with the ß-sheets being their main component. The evolution by gene duplication was identified only to the genes that contain three LSD domains, which generated proteins with equal structure. Moreover, genes encoding proteins with one or two LSD domains evolved as single-copy genes and did not result from loss or gain in LSD domains. These results were corroborated by synteny analysis among regions containing paralogous/orthologous genes in Glycine max and Populus trichocarpa. The Ka/Ks ratio between paralogous/orthologous genes revealed that a subfunctionalization process possibly could be occurring with the LSD genes, explaining the involvement of LSD members in different biological processes, in addition to the negative regulation of PCD. This study presents important novelty in the evolutionary history of the LSD family and provides a basis for future research on individual LSD genes and their involvement in important pathway networks in plants.
Assuntos
Evolução Molecular , Genes de Plantas , Filogenia , Doenças das Plantas/genética , Viridiplantae/genética , Sequência de Aminoácidos , Mapeamento Cromossômico , Dados de Sequência Molecular , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , Viridiplantae/metabolismoRESUMO
Soybean [Glycine max (L.) Merril], one of the most important crop species in the world, is very susceptible to abiotic and biotic stress. Soybean plants have developed a variety of molecular mechanisms that help them survive stressful conditions. Hybrid proline-rich proteins (HyPRPs) constitute a family of cell-wall proteins with a variable N-terminal domain and conserved C-terminal domain that is phylogenetically related to non-specific lipid transfer proteins. Members of the HyPRP family are involved in basic cellular processes and their expression and activity are modulated by environmental factors. In this study, microarray analysis and real time RT-qPCR were used to identify putative HyPRP genes in the soybean genome and to assess their expression in different plant tissues. Some of the genes were also analyzed by time-course real time RT-qPCR in response to infection by Phakopsora pachyrhizi, the causal agent of Asian soybean rust disease. Our findings indicate that the time of induction of a defense pathway is crucial in triggering the soybean resistance response to P. pachyrhizi. This is the first study to identify the soybean HyPRP group B family and to analyze disease-responsive GmHyPRP during infection by P. pachyrhizi.
RESUMO
The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by real-time quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses.
Assuntos
Resistência à Doença/genética , Doenças das Plantas/genética , Proteínas de Plantas/genética , Viridiplantae/genética , Sequência de Aminoácidos , Regulação da Expressão Gênica de Plantas , Família Multigênica , Filogenia , Alinhamento de Sequência , Estresse FisiológicoRESUMO
Rice (Oryza sativa L.) cold tolerance at the initial stages of development is a highly desirable trait to be incorporated into the state of Rio Grande do Sul, Brazil, cultivars, but selection for this trait must be performed under controlled temperature conditions, which limits the number of lines that can be evaluated. Knowledge of the inheritance of this trait is important to define breeding strategies. So the aim of this paper was to study the genetic basis of rice cold tolerance at the vegetative stage. Six genotypes with constrasting cold tolerance reactions were crossed in a diallel scheme without the reciprocals. The parents and the F1 and F2 generations were cultivated in a greenhouse until the V4 stage, when they were submitted to 10°C for ten days and evaluated for plant survival after seven days of recovery under normal temperature. The results obtained by the diallel analysis of the F1 generation indicated significance of both additive and non-additive effects, but the general combining ability was more important. The evaluation of the F2 generation revealed oligogenic inheritance with one or two dominant alleles responsible for cold tolerance in the cold tolerant parents and two complementary genes with recessive alleles segregating in the crosses involving sensitive and intermediate genotypes.
A tolerância ao frio nos estádios iniciais de desenvolvimento do arroz (Oryza sativa L.) é uma característica altamente desejável para incorporar em cultivares do Rio Grande do Sul (RS), porém a seleção para esta característica deve ser feita sob condições de temperatura controlada, o que limita o número de linhas que pode ser avaliada. O conhecimento da herança desta característica é importante para definir estratégias de melhoramento genético, assim o objetivo do presente trabalho é estudar a base genética da tolerância ao frio no estádio vegetativo do arroz. Seis genótipos com reações contrastantes de tolerância ao frio foram cruzados num esquema dialélico sem os recíprocos. Os genitores e as gerações F1 e F2 foram cultivados em casa-de-vegetação até o estádio V4, quando foram submetidos a 10°C por dez dias e avaliados quanto à sobrevivência de plantas após sete dias de recuperação sob temperatura normal. Os resultados obtidos pela análise dialélica da geração F1 indicaram significância tanto dos efeitos aditivos quanto não-aditivos, mas a capacidade geral de combinação foi mais importante. A avaliação da geração F2 revelou uma herança oligogênica com um ou dois alelos dominantes responsáveis pela tolerância ao frio nos genitores tolerantes e dois genes complementares com alelos recessivos segregando nos cruzamentos envolvendo genótipos sensíveis e intermediários.
RESUMO
Rice (Oryza sativa L.) cold tolerance at the initial stages of development is a highly desirable trait to be incorporated into the state of Rio Grande do Sul, Brazil, cultivars, but selection for this trait must be performed under controlled temperature conditions, which limits the number of lines that can be evaluated. Knowledge of the inheritance of this trait is important to define breeding strategies. So the aim of this paper was to study the genetic basis of rice cold tolerance at the vegetative stage. Six genotypes with constrasting cold tolerance reactions were crossed in a diallel scheme without the reciprocals. The parents and the F1 and F2 generations were cultivated in a greenhouse until the V4 stage, when they were submitted to 10°C for ten days and evaluated for plant survival after seven days of recovery under normal temperature. The results obtained by the diallel analysis of the F1 generation indicated significance of both additive and non-additive effects, but the general combining ability was more important. The evaluation of the F2 generation revealed oligogenic inheritance with one or two dominant alleles responsible for cold tolerance in the cold tolerant parents and two complementary genes with recessive alleles segregating in the crosses involving sensitive and intermediate genotypes.
A tolerância ao frio nos estádios iniciais de desenvolvimento do arroz (Oryza sativa L.) é uma característica altamente desejável para incorporar em cultivares do Rio Grande do Sul (RS), porém a seleção para esta característica deve ser feita sob condições de temperatura controlada, o que limita o número de linhas que pode ser avaliada. O conhecimento da herança desta característica é importante para definir estratégias de melhoramento genético, assim o objetivo do presente trabalho é estudar a base genética da tolerância ao frio no estádio vegetativo do arroz. Seis genótipos com reações contrastantes de tolerância ao frio foram cruzados num esquema dialélico sem os recíprocos. Os genitores e as gerações F1 e F2 foram cultivados em casa-de-vegetação até o estádio V4, quando foram submetidos a 10°C por dez dias e avaliados quanto à sobrevivência de plantas após sete dias de recuperação sob temperatura normal. Os resultados obtidos pela análise dialélica da geração F1 indicaram significância tanto dos efeitos aditivos quanto não-aditivos, mas a capacidade geral de combinação foi mais importante. A avaliação da geração F2 revelou uma herança oligogênica com um ou dois alelos dominantes responsáveis pela tolerância ao frio nos genitores tolerantes e dois genes complementares com alelos recessivos segregando nos cruzamentos envolvendo genótipos sensíveis e intermediários.