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The decline of honey bee populations significantly impacts the human food supply due to poor pollination and yield decreases of essential crop species. Given the reduction of pollinators, research into critical landscape components, such as floral resource availability and land use change, might provide valuable information about the nutritional status and health of honey bee colonies. To address this issue, we examine the effects of landscape factors like agricultural area, urban area, and climatic factors, including maximum temperature, minimum temperature, relative humidity, and precipitation, on honey bee hive populations and nutritional health of 326 honey bee colonies across varying landscapes in Mexico. DNA metabarcoding facilitated the precise identification of pollen from 267 plant species, encompassing 243 genera and 80 families, revealing a primary herb-based diet. Areas characterized by high landscape diversity exhibited greater pollen diversity within the colony. Conversely, colonies situated in regions with higher proportions of agricultural and urban landscapes demonstrated lower bee density. The maximum ambient temperature outside hives positively correlated with pollen diversity, aligning with a simultaneous decrease in bee density. Conversely, higher relative humidity positively influenced both the bee density of the colony and the diversity of foraged pollen. Our national-level study investigated pollen dietary availability and colony size in different habitat types, latitudes, climatic conditions, and varied levels and types of disturbances. This effort was taken to gain a better insight into the mechanisms driving declines in honey bee populations. This study illustrates the need for more biodiverse agricultural landscapes, the preservation of diverse habitats, and the conservation of natural and semi-natural spaces. These measures can help to improve the habitat quality of other bee species, as well as restore essential ecosystem processes, such as pollination and pest control.

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Climate change and land use change are two main drivers of global biodiversity decline, decreasing the genetic diversity that populations harbour and altering patterns of local adaptation. Landscape genomics allows measuring the effect of these anthropogenic disturbances on the adaptation of populations. However, both factors have rarely been considered simultaneously. Based on a set of 3660 SNPs from which 130 were identified as outliers by a genome-environment association analysis (LFMM), we modelled the spatial turnover of allele frequencies in 19 localities of Pinus leiophylla across the Avocado Belt in Michoacán state, Mexico. Then, we evaluated the effect of climate change and land use change scenarios, in addition to evaluating assisted gene flow strategies and connectivity metrics across the landscape to identify priority conservation areas for the species. We found that localities in the centre-east of the Avocado Belt would be more vulnerable to climate change, while localities in the western area are more threatened by land conversion to avocado orchards. Assisted gene flow actions could aid in mitigating both threats. Connectivity patterns among forest patches will also be modified by future habitat loss, with central and eastern parts of the Avocado Belt maintaining the highest connectivity. These results suggest that areas with the highest priority for conservation are in the eastern part of the Avocado Belt, including the Monarch Butterfly Biosphere Reserve. This work is useful as a framework that incorporates distinct layers of information to provide a more robust representation of the response of tree populations to anthropogenic disturbances.

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BACKGROUND AND AIMS: Introgressive hybridization poses a challenge to taxonomic and phylogenetic understanding of taxa, particularly when there are high numbers of co-occurring, intercrossable species. The genus Quercus exemplifies this situation. Oaks are highly diverse in sympatry and cross freely, creating syngameons of interfertile species. Although a well-resolved, dated phylogeny is available for the American oak clade, evolutionary relationships within many of the more recently derived clades remain to be defined, particularly for the young and exceptionally diverse Mexican white oak clade. Here, we adopted an approach bridging micro- and macroevolutionary scales to resolve evolutionary relationships in a rapidly diversifying clade endemic to Mexico. METHODS: Ecological data and sequences of 155 low-copy nuclear genes were used to identify distinct lineages within the Quercus laeta complex. Concatenated and coalescent approaches were used to assess the phylogenetic placement of these lineages relative to the Mexican white oak clade. Phylogenetic network methods were applied to evaluate the timing and genomic significance of recent or historical introgression among lineages. KEY RESULTS: The Q. laeta complex comprises six well-supported lineages, each restricted geographically and with mostly divergent climatic niches. Species trees corroborated that the different lineages are more closely related to other species of Mexican white oaks than to each other, suggesting that this complex is polyphyletic. Phylogenetic networks estimated events of ancient introgression that involved the ancestors of three present-day Q. laeta lineages. CONCLUSIONS: The Q. laeta complex is a morphologically and ecologically related group of species rather than a clade. Currently, oak phylogenetics is at a turning point, at which it is necessary to integrate phylogenetics and ecology in broad regional samples to figure out species boundaries. Our study illuminates one of the more complicated of the Mexican white oak groups and lays groundwork for further taxonomic study.

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Mexico is a major center of evolutionary radiation for the genus Quercus, with oak species occurring across different habitat types and showing a wide variation in morphology and growth form. Despite representing about 20% of Mexican species, scrub oaks have received little attention and even basic aspects of their taxonomy and geographic distribution remain unresolved. In this study, we analyzed the morphological and climatic niche differentiation of scrub oak populations forming a complex constituted by six named species, Quercus cordifolia, Quercus frutex, Quercus intricata, Quercus microphylla, Quercus repanda, Quercus striatula and a distinct morphotype of Q. striatula identified during field and herbarium work (hereafter named Q. striatula II). Samples were obtained from 35 sites covering the geographic distribution of the complex in northern and central Mexico. Morphological differentiation was analyzed through geometric morphometrics of leaf shape and quantification of trichome traits. Our results indicated the presence of two main morphological groups with geographic concordance. The first was formed by Q. frutex, Q. microphylla, Q. repanda and Q. striatula, distributed in the Trans-Mexican Volcanic Belt, the Sierra Madre Occidental and a little portion of the south of the Mexican Altiplano (MA). The second group consists of Q. cordifola, Q. intricata and Q. striatula II, found in the Sierra Madre Oriental and the MA. Therefore, our evidence supports the distinctness of the Q. striatula II morphotype, indicating the need for a taxonomic revision. Within the two groups, morphological differentiation among taxa varied from very clear to low or inexistent (i.e. Q. microphylla-Q. striatula and Q. cordifolia-Q. striatula II) but niche comparisons revealed significant niche differentiation in all pairwise comparisons, highlighting the relevance of integrative approaches for the taxonomic resolution of complicated groups such as the one studied here.

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The evolution of reproductive barriers, that is, the speciation process, implies the limitation of gene flow between populations. Different patterns of genomic differentiation throughout the speciation continuum may provide insights into the causal evolutionary forces of species divergence. In this study, we analysed a cryptic species complex of the genus Hetaerina (Odonata). This complex includes H. americana and H. calverti; however, in H. americana two highly differentiated genetic groups have been previously detected, which, we hypothesize, may correspond to different species with low morphological variation. We obtained single nucleotide polymorphism (SNP) data for 90 individuals belonging to the different taxa in the complex and carried out differentiation tests to identify genetic isolation. The results from STRUCTURE and discriminant analysis of principal components (DAPC), based on almost 5000 SNPs, confirmed the presence of three highly differentiated taxa. Also, we found FST values above 0.5 in pairwise comparisons, which indicates a considerable degree of genetic isolation among the suggested species. We also found low climatic niche overlap among all taxa, suggesting that each group occurs at specific conditions of temperature, precipitation and elevation. We propose that H. americana comprises two cryptic species, which may be reproductively isolated by ecological barriers related to niche divergence, since the morphological variation is minimal and, therefore, mechanical barriers are probably less effective compared to other related species such as H. calverti.

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PREMISE: Phylogeographical studies are fundamental for understanding factors that influence the spatial distribution of genetic lineages within species. Population expansions and contractions, distribution shifts, and climate changes are among the most important factors shaping the genetic compositions of populations. METHODS: We investigated the phylogeography of an endemic oak, Quercus mexicana (Fagaceae), which has a restricted distribution in northeastern Mexico along the Sierra Madre Oriental and adjacent areas. Nuclear and chloroplast DNA microsatellite markers were used to describe the genetic diversity and structure of 39 populations of Q. mexicana along its entire distribution area. We tested whether population expansion or contraction events influenced the genetic diversity and structure of the species. We also modeled the historical distributional range of Q. mexicana (for the Mid Holocene, the Last Glacial Maximum, and the Last Interglacial) to estimate the extent to which climate fluctuations have impacted the distribution of this oak species. RESULTS: Our results revealed high genetic diversity and low genetic structure in Q. mexicana populations. Ecological niche models suggested historical fluctuations in the distributional range of Q. mexicana. Historical range changes, gene flow, and physical barriers seem to have played an important role in shaping the phylogeographic structure of Q. mexicana. CONCLUSIONS: Our study indicates that the genetic structure of Q. mexicana may have been the result of responses of oak trees not only to heterogeneous environments present in the Sierra Madre Oriental and adjacent areas, but also to elevational and latitudinal shifts in response to climate changes in the past.

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Introduction: Coral reef structures in Zihuatanejo, Guerrero are well-preserved. The coverage of living corals, near 60 % at several locations, makes them comparable to other coral reefs in the states of Oaxaca, Jalisco, and Nayarit and with high potential to promote their conservation. Objective: To present the outcome of 12 years of research in coral communities from Zihuatanejo, Guerrero, as a justifying argument for the current conservation efforts in the area. Methods: We developed a baseline on the conservation status of the reef structures, bioerosion processes and the source of major natural and anthropogenic impacts. We assessed the genetic diversity of the coral zooxanthellae symbionts, the outcome of a technique of coral transplantation to recover the coverage of living corals and the local ecological knowledge to involve local inhabitants to promote conservation. Results: At least five coral reefs remain exposed to a medium-low level of impact by bioerosion and anthropization. Coral transplantation experiments made in the area showed records of transplant survival nearing 90 %. Although the warming of the sea surface temperature that occurred during the El Niño of 2015-2016 caused coral bleaching and mortality in several coral populations in this area, there were no affectations attributed to this phenomenon in other locations. This response was not related to the level of exposure to anthropogenic impacts, and the presence of thermal resistant zooxanthellae was assessed using molecular tools, confirming the existence of zooxanthellae of the genus Durusdinium. The analysis of local ecological knowledge of the inhabitants of Zihuatanejo showed that they keep elaborate knowledge on the ecology of coral reefs. This is complemented with scientific knowledge that will encourage community participation in conservation strategies. Conclusions: A long-term multidisciplinary strategy is required for coral reef conservation that encompasses: 1) assessing the role of the overall holobiont in the thermal resistance of corals from this area and 2) establishing restoration strategies of coral reefs that include the local knowledge about marine ecology, for the establishment of coral reef protection and management schemes put in place by local inhabitants.

Introducción: Los arrecifes coralinos de Zihuatanejo Guerrero están bien conservados. La cobertura de corales vivos, cerca del 60 %, los hace comparables a otras comunidades coralinas presentes en Oaxaca, Jalisco y Nayarit y con un alto potencial para promover su conservación. Objetivo: Presentar los resultados de 12 años de investigación en las comunidades coralinas de Zihuatanejo, Guerrero, como un argumento que justifica los esfuerzos actuales de conservación en el área. Métodos: Desarrollamos una línea base del estado de conservación de la estructura arrecifal, los procesos de bioerosión y las fuentes principales de impactos naturales y antropogénicos. Evaluamos la diversidad genética de los simbiontes zooxantelados de los corales, el resultado de una técnica de trasplante de corales para recuperar la cobertura de corales vivos y el conocimiento ecológico local para desarrollar estrategias de conservación con participación local. Resultados: Cinco de esas comunidades coralinas permanecen expuestas a un nivel de impacto medio a bajo por bioerosión y antropización. Los experimentos de trasplante de corales en el área mostraron una supervivencia cercana al 90 %. Aunque el calentamiento de la temperatura superficial del mar ocurrido durante el evento El Niño 2015-16 causó blanqueamiento y mortalidad coralina en algunas poblaciones de corales del área, no hubo afectaciones atribuidas a este fenómeno en otras. Esta respuesta no se relacionó con el nivel de exposición a impactos antropogénicos y la presencia de poblaciones de zooxantelas fue examinada usando herramientas moleculares, confirmando la existencia de una población del género Durusdinium. El análisis del conocimiento ecológico local de los habitantes de Zihuatanejo mostró que estos resguardan conocimientos complejos sobre la ecología de las comunidades coralinas. Este conocimiento es complementario al conocimiento científico y servirá para promover estrategias de participación ciudadana en la conservación de las comunidades coralinas. Conclusiones: Se requiere una estrategia multidisciplinaria de largo plazo para la conservación de las comunidades coralinas que incluya: 1) examinar el papel del holobionte completo en la resistencia térmica de los corales de esta área y 2) establecer estrategias de restauración en arrecifes coralinos que incluyan el conocimiento ecológico local para el establecimiento de esquemas de protección y manejo de los arrecifes coralinos a cargo de los habitantes locales.

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Honey bee decline is currently one of the world's most serious environmental issues, and scientists, governments, and producers have generated interest in understanding its causes and consequences in honey production and food supply. Mexico is one of the world's top honey producers, however, the honey bee population's status has not been documented to date. Based on 32 years of data from beekeeping, we make a country-level assessment of honey bee colony trends in Mexico. We use generalized additive mixed models to measure the associations between the percent change in honey bee hives and the percent change in honey yield per hive in relation to land-use, climate, and socioeconomic conditions. Despite the fact that the average annual yield per hive increased from 1980 to 2012, we detected a significant decline in the percent change in the number of honey bee hives across the time period studied. We also found a relationship between climatic conditions and agricultural land use, with agriculture increases and high temperatures producing a decrease in the percent change in honey yield. We found a relationship between a reduction in the temperature range (the difference between maximum and minimum temperatures) and a decrease in the percent change in the number of hives, while socioeconomic factors related to poverty levels have an impact on the number of hives and honey yields. Although long-term declines in hive numbers are not correlated with poverty levels, socioeconomic factors in states with high and medium poverty levels limit the increase in honey yield per hive. These results provide evidence that land-use changes, unfavorable climatic conditions, political, and socioeconomic factors are partially responsible for the reductions in the percent change in honey bee hives in Mexico.

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In this response, we address comments and clarify the rationale behind the choice of hypotheses aimed to describe the Quercus humboldtii phylogeography in the Colombian Andes. Finally, we explain our disagreement with the conclusions of a previous critique, since these are not necessarily adequate under the implemented population genetics approach.

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The mistletoe Psittacanthus schiedeanus, a keystone species in interaction networks between plants, pollinators, and seed dispersers, infects a wide range of native and non-native tree species of commercial interest. Here, using RNA-seq methodology we assembled the whole circularized quadripartite structure of P. schiedeanus chloroplast genome and described changes in the gene expression of the nuclear genomes across time of experimentally inoculated seeds. Of the 140,467 assembled and annotated uniGenes, 2,000 were identified as differentially expressed (DEGs) and were classified in six distinct clusters according to their expression profiles. DEGs were also classified in enriched functional categories related to synthesis, signaling, homoeostasis, and response to auxin and jasmonic acid. Since many orthologs are involved in lateral or adventitious root formation in other plant species, we propose that in P. schiedeanus (and perhaps in other rootless mistletoe species), these genes participate in haustorium formation by complex regulatory networks here described. Lastly, and according to the structural similarities of P. schiedeanus enzymes with those that are involved in host cell wall degradation in fungi, we suggest that a similar enzymatic arsenal is secreted extracellularly and used by mistletoes species to easily parasitize and break through tissues of the host.