RESUMO
The identification of the presence of genotype by environment interaction effects on important traits in Holstein cattle allows for the use of international genetic evaluations and a more efficient design of regional genetic evaluation programmes. The aim of this study was to determine the genotype × environment interaction effects in Chilean Holstein dairy cattle through the analysis of records corresponding to calvings between 1998 and 2015. Herds were classified in the central and southern regions of Chile based on herd location as well as by high and low levels of production environments based on the fat plus protein yield averages per herd within each region. The central region has a Mediterranean climate and a confined production system while the southern region has a humid temperate climate and a production system based on grazing with supplementation. Traits studied were milk yield (MY), fat yield (FY), protein yield (PY), fat content (FC) and protein content (PC) by lactation, age at first calving (AFC) and calving interval (CI). Several four-trait mixed animal models were applied to environmental category data as different traits, which included herd-year-calving season (herd-year-birth season for AFC) and lactation number as fixed effects, and animal additive genetic, sire-herd, permanent environment and residual effects as random effects. Genetic correlations (rg) for MY, FY, FC, PC and CI were found to decrease as differences between environmental categories increased. The rg between the most extreme environmental categories considered in this study for AFC (0.26) was the only one found statistically lower than 0.60. Genetic correlation values statistically lower than 0.80 (P < 0.05) were observed for AFC, CI, MY, FY and PY between some environmental categories. If separate genetic evaluations are adopted as practical criteria when the value of rg is lower than 0.60, the consequence of improving a multi-trait economic breeding objective in this population is likely to be small unless extreme environmental categories are considered. However, a moderate decrease in selection response and re-ranking of selection candidates is expected for AFC, CI and yield traits when selection is performed in different environmental conditions. Genotype × environment interaction effects involving production systems in a Mediterranean climate and confinement vs. Temperate Oceanic climate and grazing with supplementation, and between two fat plus protein yield level categories within each environment, were at most moderate for the studied traits.
Assuntos
Lactação , Leite , Animais , Bovinos/genética , Feminino , Genótipo , Parto , Fenótipo , GravidezRESUMO
The effects of reference population size and the availability of information from genotyped ancestors on the accuracy of imputation of single nucleotide polymorphisms (SNP) were investigated for Mexican Holstein cattle. Three scenarios for reference population size were examined: (1) a local population of 2,011 genotyped Mexican Holsteins, (2) animals in scenario 1 plus 866 Holsteins in the US genotype database (GDB) with genotyped Mexican daughters, and (3) animals in scenario 1 and all US GDB Holsteins (338,073). Genotypes from 4 chip densities (2 low density, 1 mid density, and 1 high density) were imputed using findhap (version 3) to the 45,195 markers on the mid-density chip. Imputation success was determined by comparing the numbers of SNP with 1 or 2 alleles missing and the numbers of differently predicted SNP (conflicts) among the 3 scenarios. Imputation accuracy improved as chip density and numbers of genotyped ancestors increased, and the percentage of SNP with 1 missing allele was greater than that for 2 missing alleles for all scenarios. The largest numbers of conflicts were found between scenarios 1 and 3. The inclusion of information from direct ancestors (dam or sire) with US GDB genotypes in the imputation of Mexican Holstein genotypes increased imputation accuracy by 1 percentage point for low-density genotypes and by 0.5 percentage points for high-density genotypes, which was about half the gain found with information from all US GDB Holsteins. A larger reference population and the availability of genotyped ancestors improved imputation; animals with genotyped parents in a large reference population had higher imputation accuracy than those with no or few genotyped relatives in a small reference population. For small local populations, including genotypes from other related populations can aid in improving imputation accuracy.
Assuntos
Bovinos/genética , Genótipo , Alelos , Animais , Cruzamento , Bovinos/classificação , México , Análise de Sequência com Séries de Oligonucleotídeos , Polimorfismo de Nucleotídeo Único , Densidade Demográfica , Estados UnidosAssuntos
Proteína Morfogenética Óssea 15/genética , Receptores de Proteínas Morfogenéticas Ósseas Tipo I/genética , Fator 9 de Diferenciação de Crescimento/genética , Tamanho da Ninhada de Vivíparos/genética , Ovinos/genética , Animais , Cruzamento , Chile , Feminino , Genótipo , Polimorfismo GenéticoRESUMO
Heritabilities and correlations for milk yield (MY), fat yield (FY), protein yield (PY), combined fat and protein yield (FPY), fat percentage (F%), protein percentage (P%), age at first kidding (AFK), interval between the first and second kidding (KI), and real and functional productive life at 72mo (FPL72) of 33,725 US dairy goats, were estimated using animal models. Productive life was defined as the total days in production until 72mo of age (PL72) for goats having the opportunity to express the trait. Functional productive life was obtained by correcting PL72 for MY, FY, PY, and final type score (FS). Six selection indexes were used, including or excluding PL72, with 6 groups of different economic weights, to estimate the responses to selection considering MY, FY, PY, and PL72 as selection criteria. The main criteria that determined the culling of a goat from the herd were low FS, MY, and FY per lactation. Heritability estimates were 0.22, 0.17, 0.37, 0.37, 0.38, 0.39, 0.54, 0.64, 0.09, and 0.16 for PL72, FPL72, MY, FY, PY, FPY, F%, P%, KI, and AFK, respectively. Most genetic correlations between the evaluated traits and PL72 or FPL72 were positive, except for F% (-0.04 and -0.06, respectively), P% (-0.002 and -0.03, respectively), and AFK (-0.03 and -0.01, respectively). The highest genetic correlations were between FPL72 and MY (0.39) and between PL72 and MY (0.33). Most phenotypic correlations between the traits evaluated and FPL72 and PL72 were positive (>0.23 and >0.26, respectively), except for F% (-0.004 and -0.02, respectively), P% (-0.05 and -0.02), KI (-0.01 and -0.07), and AFK (-0.08 and -0.08). The direct selection for PL72 increased it by 102.28d per generation. The use of MY, FY, PY, KI, or AFK as selection criteria increased PL72 by 39.21, 27.33, 35.90, -8.28, or 2.77d per generation, respectively. The inclusion of PL72 as selection criterion increased the expected response per generation from 0.15 to 17.35% in all selection indices studied.
Assuntos
Cabras/genética , Lactação/genética , Leite/metabolismo , Reprodução/genética , Criação de Animais Domésticos , Animais , Indústria de Laticínios , Feminino , Cabras/fisiologia , Fenótipo , Análise de Regressão , Estados UnidosRESUMO
This study was conducted to estimate the effects of sire breed (Charollais, Dorper, Dorset, Hampshire, and Suffolk) and genetic group of the dam [local whiteface (Criolla), grade Hampshire, grade Suffolk, F(1) Dorper × Pelibuey, Australian composite, hair sheep (Barbados Blackbelly or Pelibuey), Dorset, Hampshire and Suffolk] on birth weight, survival rate from birth to weaning, and weaning weight adjusted to 65 d of age. Data were recorded from 2004 to 2006 on crossbreed lambs obtained by artificial insemination from 114 flocks in Central Mexico. High (above the mean) or low (below the mean) environmental categories were assigned to each record from flock-year-season effects solutions obtained in fixed-effects linear model analyses. Birth weights of lambs sired by Charollais rams (3.94 kg) were heavier (P < 0.05) than those sired by Suffolk (3.69 kg) whereas Dorper-, Dorset-, and Hampshire-sired lambs were intermediate. For weaning weight, lambs sired by Charollais were the heaviest (19.16 kg) compared with lambs sired by Hampshire (17.86 kg), Suffolk (17.79 kg), and Dorper (17.28 kg) whereas Dorset sired were the lightest (16.77 kg; P < 0.05). Lambs sired by Dorset rams had a lower survival rate (77.1%) than lambs sired by Charollais, Dorper, Hampshire, or Suffolk (81.6 to 83.3%; P < 0.05). Lambs from Australian composite, Dorset, Hampshire, and Suffolk dams were heavier for birth and weaning compared with lambs from local whiteface (Criolla), hair sheep breeds (Barbados Blackbelly or Pelibuey), or crosses (F(1) Pelibuey × Dorper) dams (P < 0.05) whereas lambs from grade Hampshire and grade Suffolk were intermediate. The genetic group of the dam had no effect (P > 0.05) on survival rate. Sire breed × environmental category interaction effect was significant for birth weight (P < 0.01) and weaning weight (P < 0.05), but relatively small changes on the ranking of sire breeds were observed between environmental categories for weaning weight. Genetic group of the dam × environmental category interaction effect was significant for birth and weaning weights (P < 0.01). Weaning weight of lambs from hair sheep breeds (Barbados Blackbelly or Pelibuey) and crosses (F(1) Pelibuey × Dorper) as well as purebred Dorset, Hampshire, and Suffolk dams were more affected when changing from the high to the low environmental category compared with the other genetic groups. No breed of the sire or genetic group of the dam × environmental category interactions were (P > 0.05) observed for survival rate.
Assuntos
Criação de Animais Domésticos/métodos , Ovinos/crescimento & desenvolvimento , Ovinos/genética , Animais , Cruzamento , Cruzamentos Genéticos , Meio Ambiente , Tamanho da Ninhada de Vivíparos , México , Análise de Sobrevida , Desmame , Aumento de PesoRESUMO
Genetic and phenotypic parameters for Mexican Holstein cows were estimated for first- to third-parity cows with records from 1998 to 2003 (n=2,971-15,927) for 305-d mature equivalent milk production (MEM), fat production (MEF), and protein production (MEP), somatic cell score (SCS), subsequent calving interval (CAI), and age at first calving (AFC). Genetic parameters were obtained by average information matrix-REML methodology using 6-trait (first-parity data) and 5-trait (second- and third-parity data) animal models. Heritability estimates for production traits were between 0.17+/-0.02 and 0.23+/-0.02 for first- and second-parity cows and between 0.12+/-0.03 and 0.13+/-0.03 for third-parity cows. Heritability estimates for SCS were similar for all parities (0.10+/-0.02 to 0.11+/-0.03). For CAI, estimates of heritability were 0.01+/-0.05 for third-parity cows and 0.02+/-0.02 for second-parity cows. The heritability for AFC was moderate (0.28+/-0.03). No unfavorable estimates of correlations were found among MEM, MEF, MEP, CAI, and SCS. Estimates of environmental and phenotypic correlations were large and positive among production traits; favorable between SCS and CAI; slightly favorable between MEM, MEF, and MEP and SCS, between AFC and SCS, and between SCS and CAI; and small but unfavorable between production traits and CAI. Estimates of genetic variation and heritability indicate that selection would result in genetic improvement of production traits, AFC, and SCS. Estimates of both heritability and genetic variation for CAI were small, which indicates that genetic improvement would be difficult.
Assuntos
Bovinos/genética , Meio Ambiente , Fertilidade/genética , Lactação/genética , Glândulas Mamárias Animais/fisiologia , Leite/metabolismo , Animais , Feminino , Variação Genética , México , Modelos Genéticos , Paridade , Fenótipo , Gravidez , Característica Quantitativa Herdável , Estações do AnoRESUMO
First-parity 305-d milk yield and intervals between first and second kiddings from 1975 through 2005 were analyzed to estimate genetic and environmental parameters for United States Alpine, LaMancha, Nubian, Saanen, and Toggenburg dairy goats. The data set included 43,612 does with first-parity milk yield and 25,863 does with first kidding interval. Parameters were estimated by REML using bivariate mixed models within and across breeds. Fixed effects were month and herd-year of kidding within breed and month and breed-herd-year of kidding across breeds. Random effects were animal and residual. The heritability estimate for first-parity milk yield was 0.36+/-0.01 across breeds and ranged from 0.35 to 0.38 within breed; heritability for first kidding interval was 0.05+/-0.01 across breeds and ranged from 0.00 to 0.15 within breed. The estimate of the genetic correlation between first-parity milk yield and first kidding interval was positive (unfavorable) across breeds (0.35+/-0.09). Estimates of environmental correlations within and across breeds were positive (0.16-0.25). The presence of unfavorable genetic relationships between milk yield and kidding interval indicates a need to include reproductive performance as a selection criterion.
Assuntos
Indústria de Laticínios , Meio Ambiente , Cabras/genética , Lactação/genética , Leite/metabolismo , Parto/genética , Animais , Feminino , Masculino , Fenótipo , Gravidez , Característica Quantitativa Herdável , Fatores de TempoRESUMO
Polynomial regression models of the first, second, and third order were used to fit milk production deviations of daughters in Mexico on Canadian and US predicted transmitting ability values for 305-d mature-equivalent milk production (kg). For the pairs Canada-Mexico and Mexico-United States, 40 and 73 bulls with a minimum reliability of 0.75 were analyzed, respectively. Genetic correlations between pairs of countries were also estimated. The parameters were evaluated for all data, and for sires grouped according to the mean of the average phenotypic milk production (high and low) of their daughters' herd mates. Quadratic and cubic effects were not significant in any analysis. From linear regression models, slopes of Mexican daughter deviations on US and Canadian predicted transmitting abilities were 1.01 and 0.93, respectively. Slopes were greater but intercepts were smaller for the high versus low level of production of the sires' herd mates in Mexico. A greater difference between the genetic correlations was found for the high versus low environmental level than for the low level (0.79 vs. 0.70) for Mexico-US data compared with Canada-Mexico data (0.81 vs. 0.78). Genetic correlations between Mexico and the United States (0.74), and between Mexico and Canada (0.77), were smaller than the genetic correlation between the same Canadian and US sires (0.92), suggesting the presence of a moderate degree of genotype-environment interaction for milk production between Canada and the United States, and Mexico.