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Despite fungal diseases affecting the aerial parts of cassava (Manihot esculenta Crantz) and causing significant yield losses, there is a lack of comprehensive studies assessing resistance in the species' germplasm. This study aimed to evaluate the phenotypic diversity for resistance to anthracnose disease (CAD), blight leaf spot (BliLS), brown leaf spot (BLS), and white leaf spot (WLS) in cassava germplasm and to identify genotypes suitable for breeding purposes. A total of 837 genotypes were evaluated under field conditions across two production cycles (2021 and 2022). Artificial inoculations were carried out in the field, and data on yield and disease severity were collected using a standardized rating scale. The top 25 cassava genotypes were selected based on a selection index for disease resistance and agronomic traits. High environmental variability resulted in low heritabilities (h2) for CAD, WLS, and BLS (h2 = 0.42, 0.34, 0.29, respectively) and moderate heritability for BliLS (h2 = 0.51). While the range of data for disease resistance was narrow, it was considerably wider for yield traits. Cluster analysis revealed that increased yield traits and disease severity were associated with higher scores of the first and second discriminant functions, respectively. Thus, most clusters comprised genotypes with hybrid characteristics for both traits. Overall, there was a strong correlation among aerial diseases, particularly between BLS and BliLS (r = 0.96), while the correlation between CAD and other diseases ranged from r = 0.53 to 0.58. Yield traits showed no significant correlations with disease resistance. Although the mean selection differential for disease resistance was modest (between -2.31% and -3.61%), selection based on yield traits showed promising results, particularly for fresh root yield (82%), dry root yield (39%), shoot yield (49%), and plant vigor (26%). This study contributes to enhancing genetic gains for resistance to major aerial part diseases and improving yield traits in cassava breeding programs.

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The slow rate of multiplication is one of the main constraints on the production of cassava (Manihot esculenta Crantz). This work aimed to evaluate the use of leaf buds for rapid propagation of cassava varieties. Leaf buds were excised from three cassava varieties (BRS Kiriris, 98150-06 and 9624-09) for plantlet generation. The experiment was completely randomized with a 5 (age of mother plant) × 3 (position of the leaf buds on the stems) × 2 (agrochemical treatments) factorial design. Data were collected on leaf sprouting percentage (Spro.Per), plantlet height (Plant.Hei) and total dry mass of plantlets (Dry.Mass.Plant). There was a difference between the three traits for most of the varieties, demonstrating significant effects on the agronomic attributes evaluated. Better agronomic performance (higher sprouting percentage, plantlet height and total dry mass) in plantlets was observed in leaf buds of: i) maturing plants up to six months old; ii) more herbaceous (upper) parts; and iii) plants treated with agrochemicals (fungicides and insecticides). Considering four-month-old plants, three annual cycles, and an 81 % average sprouting, it would be possible to reach an annual multiplication rate of 1:72, which is much higher than that achieved by traditional methods using mature stem cuttings from 12-month-old plants (around 1:5). These results are important because they demonstrate the possibility of using cassava leaf buds to produce high-quality plantlets rapidly for greater multiplication and diffusion of new varieties and cultivation on a larger scale.

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The slow rate of multiplication is one of the main constraints on the production of cassava (Manihot esculenta Crantz). This work aimed to evaluate the use of leaf buds for rapid propagation of cassava varieties. Leaf buds were excised from three cassava varieties (BRS Kiriris, 98150-06 and 9624-09) for plantlet generation. The experiment was completely randomized with a 5 (age of mother plant) × 3 (position of the leaf buds on the stems) × 2 (agrochemical treatments) factorial design. Data were collected on leaf sprouting percentage (Spro.Per), plantlet height (Plant.Hei) and total dry mass of plantlets (Dry.Mass.Plant). There was a difference between the three traits for most of the varieties, demonstrating significant effects on the agronomic attributes evaluated. Better agronomic performance (higher sprouting percentage, plantlet height and total dry mass) in plantlets was observed in leaf buds of: i) maturing plants up to six months old; ii) more herbaceous (upper) parts; and iii) plants treated with agrochemicals (fungicides and insecticides). Considering four-month-old plants, three annual cycles, and an 81 % average sprouting, it would be possible to reach an annual multiplication rate of 1:72, which is much higher than that achieved by traditional methods using mature stem cuttings from 12-month-old plants (around 1:5). These results are important because they demonstrate the possibility of using cassava leaf buds to produce high-quality plantlets rapidly for greater multiplication and diffusion of new varieties and cultivation on a larger scale.(AU)

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Genome-wide selection (GWS) is currently a technique of great importance in plant breeding, since it improves efficiency of genetic evaluations by increasing genetic gains. The process is based on genomic estimated breeding values (GEBVs) obtained through phenotypic and dense marker genomic information. In this context, GEBVs of N individuals are calculated through appropriate models, which estimate the effect of each marker on phenotypes, allowing the early identification of genetically superior individuals. However, GWS leads to statistical challenges, due to high dimensionality and multicollinearity problems. These challenges require the use of statistical methods to approach the regularization of the estimation process. Therefore, we aimed to propose a method denominated as triple categorical regression (TCR) and compare it with the genomic best linear unbiased predictor (G-BLUP) and Bayesian least absolute shrinkage and selection operator (BLASSO) methods that have been widely applied to GWS. The methods were evaluated in simulated populations considering four different scenarios. Additionally, a modification of the G-BLUP method was proposed based on the TCR-estimated (TCR/G-BLUP) results. All methods were applied to real data of cassava (Manihot esculenta) with to increase efficiency of a current breeding program. The methods were compared through independent validation and efficiency measures, such as prediction accuracy, bias, and recovered genomic heritability. The TCR method was suitable to estimate variance components and heritability, and the TCR/G-BLUP method provided efficient GEBV predictions. Thus, the proposed methods provide new insights for GWS.

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Genome-wide selection (GWS) is currently a technique of great importance in plant breeding, since it improves efficiency of genetic evaluations by increasing genetic gains. The process is based on genomic estimated breeding values (GEBVs) obtained through phenotypic and dense marker genomic information. In this context, GEBVs of N individuals are calculated through appropriate models, which estimate the effect of each marker on phenotypes, allowing the early identification of genetically superior individuals. However, GWS leads to statistical challenges, due to high dimensionality and multicollinearity problems. These challenges require the use of statistical methods to approach the regularization of the estimation process. Therefore, we aimed to propose a method denominated as triple categorical regression (TCR) and compare it with the genomic best linear unbiased predictor (G-BLUP) and Bayesian least absolute shrinkage and selection operator (BLASSO) methods that have been widely applied to GWS. The methods were evaluated in simulated populations considering four different scenarios. Additionally, a modification of the G-BLUP method was proposed based on the TCR-estimated (TCR/G-BLUP) results. All methods were applied to real data of cassava (Manihot esculenta) with to increase efficiency of a current breeding program. The methods were compared through independent validation and efficiency measures, such as prediction accuracy, bias, and recovered genomic heritability. The TCR method was suitable to estimate variance components and heritability, and the TCR/G-BLUP method provided efficient GEBV predictions. Thus, the proposed methods provide new insights for GWS.(AU)

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Genetic redundancy in cassava (Manihot esculenta Crantz) presents a challenge to efficient management of genetic resources. This study aimed to identify and define the genetic structure of duplicates in cassava germplasm from various Embrapa research units, using single-nucleotide polymorphism (SNP) markers. We evaluated 2,371 accessions with 20,712 SNPs. The identification of duplicates was performed based on multilocus genotypes (MLG), adopting a maximum genetic distance threshold of 0.05. The population structure was defined based on discriminant analysis of principal components (DAPC). A total of 1,757 unique and 614 duplicate accessions were identified. The redundancy of the collections ranged from 17 % (Belém, PA – Brazil) to 39 % (Petrolina, PE – Brazil), with an average of 21 %. This redundancy between different research units is probably due to the historical sharing of accessions, as well as collections carried out in the same region, or even to the intense germplasm exchange between farmers with different genotype names. In terms of genetic structure, the 250 principal components explained 88 % of the genetic variation of the SNP markers and defined the hierarchical structure of the duplicate cassava germplasm in 12 groups. Since heterotic groups have not yet been identified for cassava, crosses between accessions of the 12 DAPC groups may be promising. All MLGs were allocated within the same DAPC group, corroborating duplicate analyses yet still revealing high variability between groups that were quite distinct based on the first two discriminant functions. Our results contribute to optimizing the conservation of genetic resources, together with understanding diversity and its use in crop improvement.

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Genetic redundancy in cassava (Manihot esculenta Crantz) presents a challenge to efficient management of genetic resources. This study aimed to identify and define the genetic structure of duplicates in cassava germplasm from various Embrapa research units, using single-nucleotide polymorphism (SNP) markers. We evaluated 2,371 accessions with 20,712 SNPs. The identification of duplicates was performed based on multilocus genotypes (MLG), adopting a maximum genetic distance threshold of 0.05. The population structure was defined based on discriminant analysis of principal components (DAPC). A total of 1,757 unique and 614 duplicate accessions were identified. The redundancy of the collections ranged from 17 % (Belém, PA Brazil) to 39 % (Petrolina, PE Brazil), with an average of 21 %. This redundancy between different research units is probably due to the historical sharing of accessions, as well as collections carried out in the same region, or even to the intense germplasm exchange between farmers with different genotype names. In terms of genetic structure, the 250 principal components explained 88 % of the genetic variation of the SNP markers and defined the hierarchical structure of the duplicate cassava germplasm in 12 groups. Since heterotic groups have not yet been identified for cassava, crosses between accessions of the 12 DAPC groups may be promising. All MLGs were allocated within the same DAPC group, corroborating duplicate analyses yet still revealing high variability between groups that were quite distinct based on the first two discriminant functions. Our results contribute to optimizing the conservation of genetic resources, together with understanding diversity and its use in crop improvement.(AU)

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In cassava (Manihot esculenta Crantz), transferring genes via genetic breeding depends on crosses between contrasting progenitors, which is often limited by the low flowering rate of many genotypes. The main purpose of this work was to evaluate the effect of grafting on floral induction of cassava. For this, three genotypes were used: 1) BRS Formosa: a genotype with low flowering rate; 2) BGM0823: a genotype with high flowering rate; and 3) FLA05-02: a genotype of M. esculenta ssp. flabellifolia with high flowering rate. Cleft grafting was performed to generate the following treatments: Self-grafting of: 1) BGM0823 (Self-0823); 2) BRS Formosa (Self-Formosa); and 3) FLA05-02 (Self-FLA); and grafting of the genotypes, with the first being the scion and the second the rootstock: 4) BGM0823 × BRS Formosa; 5) BGM0823 × FLA05-02; 6) FLA05-02 × BRS Formosa; 7) FLA05-02 × BGM0823; 8) BRS Formosa × BGM0823; 9) BRS Formosa × FLA05-02; and also ungrafted treatments: 10) BGM0823; 11) BRS Formosa; and 12) FLA05-02. The results showed a 201% increase in the production of male flowers, 560% of female flowers and 400% of fruits in BRS Formosa grafted on BGM0823. BGM0823 (rootstock) also increased fruit production by 190% of FLA05-02. The grafted cassava plants exhibited an increase on the shoot production, although there was no change in the fresh root yield. The grafting of genotypes with high flowering rates can induce flowering in genotypes with low flowering rates.

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The passion fruit woodiness disease, induced by Cowpea aphid borne mosaic virus (CABMV), is considered the most economically important factor limiting passion fruit production in many countries. This study aimed to assess the progression of symptoms caused by CABMV in different Passiflora species. Eighty genotypes belonging 12 species were evaluated in experiments carried out in a completely randomized block design with treatments arranged in a factorial scheme (80 genotypes x 7 evaluation intervals) considering each inoculated plant as a repetition. The disease severity was estimated by the disease index (DI). The evaluations were performed at 20, 27, 34, 41, 48, 55 and 62 days after inoculation (DAI). The average DI values were used to describe the disease progress at each evaluation interval. The shortest time from evaluation to stabilization of CABMV progress was considered to cluster the genotypes by the Scott- Knott test (p0.05) and to classify the genotypes as resistant (R), moderately resistant (MR), moderately susceptible (MS), susceptible (S) or highly susceptible (HS). The mean severity gradually increased in the intervals from 20 to 55 DAI and reached a maximum at 62 DAI. The five classes (R, MR, MS, S and HS) contained about 19, 24, 36, 10 and 11% of the germplasm accessions, respectively. The disease temporal progress was quite variable within and among groups, although no difference in DI was observed in the genotypes after 55 DAI, indicating genotype symptom stabilization at this time, regardless of the genotype resistance level.

O endurecimento dos frutos causada pelo Cowpea aphid borne mosaic virus (CABMV) é considerada a doença mais importante economicamente limitando a produção de maracujazeiro em vários países. O objetivo deste trabalho foi avaliar o progresso dos sintomas causados pelo CABMV em espécies de Passiflora. O estudo foi realizado em delineamento em blocos casualizados, em esquema fatorial (80 genótipos x 7 períodos de avaliação) considerando cada planta como uma repetição, utilizando 80 genótipos pertencente a 12 espécies de maracujazeiro. A severidade foi estimada por meio do índice de doença (ID). As avaliações foram realizadas 20, 27, 34, 41, 48, 55 e 62 dias após a inoculação (DAI). As médias do ID foram utilizadas para verificar a evolução da doença em cada período de avaliação. O período mínimo para estabilização do progresso do CABMV foi utilizado para agrupar os genótipos pelo teste Scott-Knott (p0,05), bem como para classificar os genótipos em resistente (R), moderadamente resistente (MR), moderadamente suscetível (MS), suscetível (S), e altamente suscetível (AS). A severidade média da doença aumentou gradativamente nos intervalos de 20 a 55 DAI e atingiu seu máximo aos 62 DAI. Cerca de 19, 24, 36, 10 e 11% do germoplasma avaliado foi classificado como R, MR, MS, S e AS, respectivamente. O progresso temporal da doença foi bastante variável dentro e entre os grupos, embora não tenha sido observada diferença no ID dos genótipos a partir de 55 DAI, indicando a estabilização dos sintomas a partir deste período, independentemente do nível de resistência do genótipo.

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This study aimed to evaluate the agronomic performance of cassava genotypes from the in vitro shoot tip culture to eliminate the cassava frogskin disease for several root and aerial part characteristics. Cassava plants from accessions BGM0315, BGM0464 and BGM0841 infected with cassava frogskin disease were grown in a greenhouse after clonal cleaning. Cuttings from the three accessions were subjected to tetracycline concentrations (0, 5, 10 and 15 mg L-1) for three minutes, and then maintained in an acclimatized chamber (35 ± 1 °C and 16 hour photoperiod). Shoots were disinfected for excising shoot tips (0.2 mm and 0.4 mm) and inoculated in a culture medium containing the same concentrations of tetracycline used in the cuttings. After 60 days of cultivation, the explants were transferred to medium without antibiotic, 30 days later they were acclimatized for a period of 70 days for subsequent planting in the field. Seven months after planting, agronomical evaluation was held for root and aerial part characteristics. No influence of isolated shoot tip size was noticed on agronomic characteristics, while the addition of tetracycline in the culture medium, specifically at the concentrations of 5 mg L-1 and 15 mg L-1, was favorable to the development of the root system of plants in the field. The results revealed that the agronomic performance of cassava plants derived from in vitro cultivation are higher for the production of basic propagation material for the following production cycles, as well as root production for commercial use with subsequent generation of income.

Este trabalho teve por objetivo avaliar o desempenho agronômico de genótipos de mandioca provenientes do cultivo in vitro de ápices caulinares para eliminação da doença couro de sapo (Cassava frogskin disease, CFSD), em relação a diversas características de raiz e da parte aérea. Para isso, foram utilizadas plantas de mandioca dos acessos BGM0315, BGM0464 e BGM0841 cultivadas em casa de vegetação após a limpeza clonal. Inicialmente, foram utilizadas manivas de plantas adultas infectadas com couro de sapo. Essas manivas foram submetidas a concentrações de tetraciclina (0, 5, 10 e 15 mg L-1) por 3 minutos. Posteriormente, foram mantidas em câmara climatizada (35 ± 1°C e fotoperíodo de 16 horas). Brotos foram desinfestados para excisão de ápices caulinares (0,2 mm e 0,4 mm) e inoculados em meio de cultura contendo as mesmas concentrações de tetraciclina empregadas nas manivas. Aos 60 dias de cultivo, os explantes foram transferidos para meio sem antibiótico, 30 dias após foram aclimatizadas por um período de 70 dias para posterior plantio em campo. Aos sete meses após o plantio realizou-se a avaliação agronômica para características de raiz e parte aérea. Não houve influência do tamanho do ápice caulinar isoladamente nas características agronômicas avaliadas, enquanto que a adição de tetraciclina no meio de cultura, especificamente nas concentrações de 5 e 15 mg L-1, foi favorável ao desenvolvimento do sistema radicular das plantas no campo. Os resultados evidenciaram que o desempenho agronômico de plantas de mandioca provenientes do cultivo in vitro são elevados para produção de material propagativo básico para os ciclos seguintes de produção, bem como para produção de raízes para uso comercial com consequente geração de renda.

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