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Plants modulate the soil microbiota and select a specific microbial community in the rhizosphere. However, plant domestication reduces genetic diversity, changes plant physiology, and could have an impact on the associated microbiome assembly. Here, we used 16S rRNA gene sequencing to assess the microbial community in the bulk soil and rhizosphere of wild, semi-domesticated, and domesticated genotypes of lima bean (Phaseolus lunatus), to investigate the effect of plant domestication on microbial community assembly. In general, rhizosphere communities were more diverse than bulk soil, but no differences were found among genotypes. Our results showed that the microbial community's structure was different from wild and semi-domesticated as compared to domesticated genotypes. The community similarity decreased 57.67% from wild to domesticated genotypes. In general, the most abundant phyla were Actinobacteria (21.9%), Proteobacteria (20.7%), Acidobacteria (14%), and Firmicutes (9.7%). Comparing the different genotypes, the analysis showed that Firmicutes (Bacillus) was abundant in the rhizosphere of the wild genotypes, while Acidobacteria dominated semi-domesticated plants, and Proteobacteria (including rhizobia) was enriched in domesticated P. lunatus rhizosphere. The domestication process also affected the microbial community network, in which the complexity of connections decreased from wild to domesticated genotypes in the rhizosphere. Together, our work showed that the domestication of P. lunatus shaped rhizosphere microbial communities from taxonomic to a functional level, changing the abundance of specific microbial groups and decreasing the complexity of interactions among them.

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Plant breeding reduces the genetic diversity of plants and could influence the composition, structure, and diversity of the rhizosphere microbiome, selecting more homogeneous and specialized microbes. In this study, we used 16S rRNA sequencing to assess the bacterial community in the rhizosphere of different lines and modern cowpea cultivars, to investigate the effect of cowpea breeding on bacterial community assembly. Thus, two African lines (IT85F-2687 and IT82D-60) and two Brazilian cultivars (BRS-Guariba and BRS-Tumucumaque) of cowpea were assessed to verify if the generation advance and genetic breeding influence the bacterial community in the rhizosphere. No significant differences were found in the structure, richness, and diversity of bacterial community structure between the rhizosphere of the different cowpea genotypes, and only slight differences were found at the OTU level. The complexity of the co-occurrence network decreased from African lines to Brazilian cultivars. Regarding functional prediction, the core functions were significantly altered according to the genotypes. In general, African lines presented a more abundance of groups related to chemoheterotrophy, while the rhizosphere of the modern cultivars decreased functions related to cellulolysis. This study showed that the genetic breeding process affects the dynamics of the rhizosphere community, decreasing the complexity of interaction in one cultivar. As these cowpea genotypes are genetically related, it could suggest a new hypothesis of how genetic breeding of similar genotypes could influence the rhizosphere microbiome.

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Abstract: Sugarcane is an important Brazilian commodity, being usually cultivated in soils with low natural fertility. This study aimed to isolate diazotrophic endophytes from sugarcane tissues and evaluate the morphological and physiological characteristics of their colonies as well as their plant growth-promoting (PGP) traits in select diazotrophic endophytic bacteria. Fifty-six bacterial isolates were identified in the sugarcane tissues, and these isolates presented distinct morphological and physiological traits. A total of thirty-five bacterial isolates were biochemically evaluated. Overall, Bacillus was the dominant genus. Isolates of Methylobacterium spp. and Brevibacillus agri were present only in leaves, while Herbaspirillum seropedicae occurred only in stems. Except to IPA-CF45A, all isolates were nitrogenase positive. All endophytes exhibit production of indol 3-acetic acid. Over 50% of endophytes solubilize phosphate, release N-acyl homoserine lactones, and present the activity of 1-aminocyclopropane-1-carboxylic acid deaminase, catalase, lipase and protease. The network analysis showed that isolates belonged to Burkholderia, Herbaspirillum, and Methylobacterium interact with Bacillus. Bacterial endophytes exhibited distinct morphological, physiological, and PGP traits that are useful for sustainable agriculture, highlighting the isolates IPA-CC33, IPA-CF65, IPA-CC9 and IPA-CF27. Further studies on the effects of these diazotrophic endophytes and their potential for providing microbial inoculants for improving sugarcane fields will provide valuable information to maintain the sustainability and environment quality.

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The process of composting has been proposed as a biological alternative to improve the quality of tannery sludge (TS) by the action of microbial communities. However, there is limited knowledge about the dynamic of these microbial communities during the composting process. This study assessed the responses of bacterial and archaeal communities during TS composting using the 16S rRNA sequencing. The composting process occurred within 90 days, and samples of compost were collected on day 7 (d7; mesophilic stage), 30 (d30; thermophilic stage), 60 (d60; cooling stage), and 90 (d90; maturation stage). The results showed a succession of microbial phyla during the composting with enrichment of Synergistetes, WS1, and Euryarchaeota at the mesophilic stage, while at the thermophilic stage, there was an enrichment of Hydrogenedentes, WPS-2, Chloroflexi, and Deinococcus-Thermus. At the cooling stage, there was an enrichment of Kiritimatiellaeota, and at the maturation stage, there was an enrichment of Entotheonellaeota, Dadabacteria, Nitrospirae, Dependiatiae, and Fibrobacteres. When analyzing the drivers influencing microbial communities, Cr and pH presented more negative correlations with general phyla. In contrast, S, C, K, temperature, and N presented more positive correlations, while Ni, Cd, and P showed fewer correlations. According to niche occupancy, we observed a decreased proportion of generalists with a consequently increased proportion of specialists following the composting process. This study showed that different stages of the composting present a specific microbial community structure and dynamics, which are related to some specific composting characteristics.

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The aim of this study was to characterize lima bean nodulating rhizobial from soils of northeastern Brazil. Soil samples were collected in regions with production of lima bean in the Ceara, Piaui and Maranhao states. The experiment was conducted in pots containing soil from each region, sowed with lima bean. Nodules were sampled for isolation and characterization at 35 days after plant emergence. A total of 75 isolates were found and submitted to morphological and physiological characterization. Morphologically, the majority of isolates exhibited circular and convex colonies with entire border and smooth surface. Physiologically, all isolated presented fast growth, and the majority of isolates presented acid reaction, moderate ability to produce mucus with gummy consistency and colonies with cream coloration. The isolates found in this study presented similar characteristics to genera Rhizobium, Sinorhizobium, Allorhizobium e Mesorhizobium.

O objetivo deste estudo foi caracterizar isolados de rizóbios noduladores de feijão-fava oriundos de solos dos estados do Ceará, Piauí e Maranhão. Amostras de solos foram coletadas de áreas produtoras de feijão-fava nos estados do Ceará, Piauí e Maranhão. O experimento foi realizado em vasos, contendo solo de cada local, semeados com feijão-fava.  A coleta dos nódulos para isolamento e caracterização foi realizada aos 35 dias após a emergência das plantas. O total de 75 isolados foram obtidos e submetidos a caracterização morfológica e fisiológica. Morfologicamente, a maioria dos isolados exibiram colônias circulares, convexas, com bordas inteiras e de superfície lisa. Fisiologicamente, todos os isolados apresentaram crescimento rápido e a maioria apresentou reação ácida, habilidade moderada de produzir muco com consistência gomosa e colônias com coloração creme. Os isolados encontrados nestes solos apresentaram características morfológicas e fisiológicas similares àquelas encontradas nos gêneros Rhizobium, Sinorhizobium, Allorhizobium e Mesorhizobium.

Assuntos

RESUMO

The aim of this study was to characterize lima bean nodulating rhizobial from soils of northeastern Brazil. Soil samples were collected in regions with production of lima bean in the Ceara, Piaui and Maranhao states. The experiment was conducted in pots containing soil from each region, sowed with lima bean. Nodules were sampled for isolation and characterization at 35 days after plant emergence. A total of 75 isolates were found and submitted to morphological and physiological characterization. Morphologically, the majority of isolates exhibited circular and convex colonies with entire border and smooth surface. Physiologically, all isolated presented fast growth, and the majority of isolates presented acid reaction, moderate ability to produce mucus with gummy consistency and colonies with cream coloration. The isolates found in this study presented similar characteristics to genera Rhizobium, Sinorhizobium, Allorhizobium e Mesorhizobium.(AU)

O objetivo deste estudo foi caracterizar isolados de rizóbios noduladores de feijão-fava oriundos de solos dos estados do Ceará, Piauí e Maranhão. Amostras de solos foram coletadas de áreas produtoras de feijão-fava nos estados do Ceará, Piauí e Maranhão. O experimento foi realizado em vasos, contendo solo de cada local, semeados com feijão-fava.  A coleta dos nódulos para isolamento e caracterização foi realizada aos 35 dias após a emergência das plantas. O total de 75 isolados foram obtidos e submetidos a caracterização morfológica e fisiológica. Morfologicamente, a maioria dos isolados exibiram colônias circulares, convexas, com bordas inteiras e de superfície lisa. Fisiologicamente, todos os isolados apresentaram crescimento rápido e a maioria apresentou reação ácida, habilidade moderada de produzir muco com consistência gomosa e colônias com coloração creme. Os isolados encontrados nestes solos apresentaram características morfológicas e fisiológicas similares àquelas encontradas nos gêneros Rhizobium, Sinorhizobium, Allorhizobium e Mesorhizobium.(AU)

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This study evaluated the responses of lima bean (Phaseolus lunatus L.) to application of composted tannery sludge on nodulation, N uptake and plant growth. For eight years, the compost was applied at rates of: 0, 2.5, 5, 10, and 20 Mg ha-1 (dry basis). Plants of lima bean showed higher nodulation in treatments with compost; however, nodules reported in these treatments presented lower biomass, size and diversity than those reported in treatment without compost. Accumulation of N increased with the application of the highest rate (20 Mg ha-1), while there was an increase in chromium content in shoot with the increase in compost rates. Thus, the use of composted tannery sludge, in long-term, increases the accumulation of chromium in plants, increasing nodulation, while decrease rhizobia diversity in nodules.(AU)

Este estudo avaliou a resposta do feijão-fava (Phaseolus lunatus L.) a aplicação de lodo de curtume compostado na nodulação, absorção de N e crescimento. Durante oito anos, o composto foi aplicado em doses de: 0, 2.5, 5, 10, e 20 Mg ha-1 (base seca). As plantas de feijão-fava mostraram maior nodulação nos tratamentos com o composto. Entretanto, os nódulos encontrados nestes tratamentos apresentaram menor biomassa, tamanho e diversidade do que os observados no tratamento sem composto. A acumulação de N aumentou com a aplicação da maior dose do composto (20 Mg ha-1), enquanto que houve um aumento nos teores de crômio na parte aérea com o aumento das doses do composto. Desta forma, o uso do lodo de curtume compostado, em longo prazo, aumenta a acumulação de crômio, aumentando a nodulação, enquanto diminui a diversidade de rizóbios nos nódulos.(AU)

Assuntos

RESUMO

This study evaluated the responses of lima bean (Phaseolus lunatus L.) to application of composted tannery sludge on nodulation, N uptake and plant growth. For eight years, the compost was applied at rates of: 0, 2.5, 5, 10, and 20 Mg ha-1 (dry basis). Plants of lima bean showed higher nodulation in treatments with compost; however, nodules reported in these treatments presented lower biomass, size and diversity than those reported in treatment without compost. Accumulation of N increased with the application of the highest rate (20 Mg ha-1), while there was an increase in chromium content in shoot with the increase in compost rates. Thus, the use of composted tannery sludge, in long-term, increases the accumulation of chromium in plants, increasing nodulation, while decrease rhizobia diversity in nodules.

Este estudo avaliou a resposta do feijão-fava (Phaseolus lunatus L.) a aplicação de lodo de curtume compostado na nodulação, absorção de N e crescimento. Durante oito anos, o composto foi aplicado em doses de: 0, 2.5, 5, 10, e 20 Mg ha-1 (base seca). As plantas de feijão-fava mostraram maior nodulação nos tratamentos com o composto. Entretanto, os nódulos encontrados nestes tratamentos apresentaram menor biomassa, tamanho e diversidade do que os observados no tratamento sem composto. A acumulação de N aumentou com a aplicação da maior dose do composto (20 Mg ha-1), enquanto que houve um aumento nos teores de crômio na parte aérea com o aumento das doses do composto. Desta forma, o uso do lodo de curtume compostado, em longo prazo, aumenta a acumulação de crômio, aumentando a nodulação, enquanto diminui a diversidade de rizóbios nos nódulos.

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