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Currently, 130 species of the genus Coffea have been identified [...].

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Coffee stands as one of the world's most popular beverages, and its quality undergoes the influence of numerous pre- and post-harvest procedures. These encompass genetic variety, cultivation environment, management practices, harvesting methods, and post-harvest processing. Notably, microbial communities active during fermentation hold substantial sway over the ultimate quality and sensory characteristics of the final product. The interaction between plants and microorganisms assumes critical significance, with specific microbes assuming pivotal roles in coffee plant growth, fruit development, and, subsequently, the fruit's quality. Microbial activities can synthesize or degrade compounds that influence the sensory profile of the beverage. However, studies on the metabolic products generated by various coffee-related microorganisms and their chemical functionality, especially in building sensory profiles, remain scarce. The primary aim of this study was to conduct a literature review, based on a narrative methodology, on the current understanding of the plant-microorganism interaction in coffee production. Additionally, it aimed to explore the impacts of microorganisms on plant growth, fruit production, and the fermentation processes, directly influencing the ultimate quality of the coffee beverage. Articles were sourced from ScienceDirect, Scopus, Web of Science, and Google Scholar using specific search terms such as "coffee microorganisms", "microorganisms-coffee interactions", "coffee fermentation", "coffee quality", and 'coffee post-harvest processing". The articles used were published in English between 2000 and 2023. Selection criteria involved thoroughly examining articles to ensure their inclusion was based on results about the contribution of microorganisms to both the production and quality of the coffee beverage. The exploration of microorganisms associated with the coffee plant and its fruit presents opportunities for bioprospecting, potentially leading to targeted fermentations via starter cultures, consequently generating new profiles. This study synthesizes existing data on the current understanding of the coffee-associated microbiome, its functionalities within ecosystems, the metabolic products generated by microorganisms, and their impacts on fermentation processes and grain and beverage quality. It highlights the importance of plant-microorganism interactions in the coffee production chain.

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Coffee genotypes cultivated in the Amazonian region have been gaining increasing prominence in Brazilian plantations. This study aimed to quantify nutrient accumulation in the fruits, grains, and husks of Robusta coffee genotypes cultivated in the Brazilian Amazon and estimate genetic diversity. The experiment was conducted in Alta Floresta D'Oeste-Rondônia, Brazil. To assess nutrient accumulation, fresh fruits were collected. These were dried, processed, separated into grains and husks, and subjected to chemical analysis. Nutrient accumulation in fruits, grains, and husks, as well as the grain/husk ratio, underwent analysis of variance through the F-test (p < 0.01. For each evaluated trait, the experimental coefficient of 337 variation (CVe), genetic coefficient of variation (CVg), and genotypic determination coefficient (H2) were also estimated. Variability was observed among Robusta coffee genotypes, with VP06, AS4, and AS10 being the most dissimilar. LB080 had the lowest dry fruit weight and the lowest percentage of grains in relation to husks. ZD156 accumulated more K in the grains, while VP06 and AS10 were the genotypes that accumulated more nutrients in the husks. Nutrients N, K, Ca, and P are accumulated in larger quantities, necessitating the calibration of mineral fertilization dosages and distribution.

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Our objectives were to study characteristics of the fruit (weight, percentage of husk/grain), to determine the concentration and accumulation of nutrients in the fruits, grain and husk, and to verify the existence of genetic diversity in Coffea canephora genotypes. The experiment was conducted with 20 genotypes in a four-year-old plantation, in a randomized block design with four replications and five plants per plot. The fruits were oven-dried, depulped (husk separated from the grain) and sent to a laboratory for nutritional analysis. Macronutrients N and K were the most accumulated/exported in fruits, respectively. In addition, the different genotype control cycles influenced the accumulation of nutrients in the fruits. There was genetic diversity among the 20 C. canephora genotypes, studied for the characteristics of concentration and percentage of grain/straw nutrients in the fruit. Genotypes 2, 8 and 13 were the ones with the greatest genetic distance, consequently they are the most dissimilar when compared to the other genotypes. Genotypes 8 and 1 stand out for having a higher proportion of fruit weight in relation to grains. Therefore, they are the genotypes that need a smaller amount of fruit to produce 1000 kg of ground coffee.

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ABSTRACT: Genetic variability is the basis for coffee genetic breeding. This study evaluated the potential of leaf anatomy and morpho-agronomic traits in studies of genetic variability in C. canephoracultivars. Ten genotypes were distributed in randomized block designs with three replicates. Significant differences among genotypes were detected by F-test (P < 0.05) for 13 of 15 evaluated traits. These results evidenced the heterogeneity of the studied cultivars, which is essential in composition of genetic basis in breeding programs. The Scott-Knott test detected variability among genotypes, grouped into up to four mean groups. Leaf anatomy traits presented the largest variations. Five out of seven leaf anatomy traits presented heritability higher than 80%, with emphasis on stomatal density (95.69%) and stomatal pore length (92.72%). Positive correlations were observed among morpho-agronomic and anatomic traits. Cluster analysis used the Mahalanobis general distance (D2) as a measure of genetic dissimilarity and divided the genotypes into two distinct groups. The inclusion of leaf anatomic traits to characterize C. canephoragenotypes may assist plant breeders with better genetic discrimination and with greater security in plant selection when composing cultivars.

RESUMO: A variabilidade genética é a base para o progresso genético em café. Este estudo teve como objetivo, avaliar o potencial de caracteres morfoagronômicos e anatômicos foliares em estudos de variabilidade genética entre cultivares de Coffea canephora. Dez genótipos foram distribuídos em um experimento seguindo delineamento em blocos ao acaso com três repetições. Foram detectadas diferenças significativas entre os genótipos pelo teste F (P < 0,05) para 13 dos 15 caracteres avaliados. Esses resultados evidenciaram a heterogeneidade entre as cultivares estudadas, o que é essencial para a composição da base genética e avanço dos programas de melhoramento. O teste de Scott e Knott detectou as diferenças entre os genótipos, separando-os em quatro grupos. Os caracteres anatômicos foliares apresentaram as maiores variações. Cinco, dentre os sete caracteres anatômicos foliares, apresentaram estimativas de herdabilidade superiores a 80% com destaque para a densidade estomática (95,69%) e comprimento do poro estomático (92,72%). Correlações positivas foram observadas entre caracteres morfoagronômicos e anatômicos foliares. A análise de agrupamento, considerando a distância de Mahalanobis como medida de dissimilaridade (D²), apontou a distinção de dois grupos de genótipos. A inclusão de caracteres anatômicos foliares na caracterização de genótipos de C. canephora pode auxiliar os melhoristas de plantas na melhor discriminação entre genótipos e maior segurança na seleção de clones para geração de novas cultivares.

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This work aimed to use the Bayesian approach to discriminate 43 genotypes of Coffea canephora cv. Conilon, which were cultivated in two producing regions to identify the most stable and productive genotypes. The experiment was a randomized block design with three replications and seven plants per plot, carried out in the south of Bahia and the north of Espírito Santo, environments with different climatic conditions, and evaluated during four harvests. The proposed Bayesian methodology was implemented in R language, using the MCMCglmm package. This approach made it possible to find great genetic divergence between the materials, and detect significant effects for both genotype, environment, and year, but the hyper-parametrized models (block effect) presented problems of singularity and convergence. It was also possible to detect a few differences between crops within the same environment. With a model with lower residual, it was possible to recommend the most productive genotypes for both environments: LB1, AD1, Peneirão, Z21, and P2.

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The objective of this work was to use the Bayesian approach, modeling the interaction of coffee genotypes with the environment, using a bisegmented regression to identify stable and adapted genotypes. A group of 43 promising genotypes of Coffea canephora was chosen. The genotypes were arranged in a randomized block design with three replications of seven plants each. The experimental plot was harvested four years in the study period, according to the maturation cycle of each genotype. The proposed Bayesian methodology was implemented in the free program R using rstanarm and coda packages. It was possible to use previous information on coffee genotypes as prior information on parameter distributions of an Adaptability and Stability model, which allowed obtaining shorter credibility intervals and good evidence of low bias in the model by the determination coefficient. After fine adjustments in the approach, it was possible to make inferences about the significant GxE interaction and to discriminate the coffee genotypes regarding production, adaptability, and stability. This is still a new approach for perennials, and since it allows more accurate estimates it can be advantageous when planning breeding programs. The Z21 genotype is recommended to compose part of selected genetic material for highly technical farmers, as it responds very well to the favorable environment, being one of the most productive and with excellent stability.

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Intercropped systems with Conilon coffee might provide a better environment for coffee production. The aim of this study was to assess the microclimate and development of Conilon coffee intercropped with papaya trees. Papaya was planted with spacing of 3.20 x 2.40 m. The coffee trees were planted after eight months, with spacing of 3.20 x 1.60 m, in-between papaya trees (in the same row). The measurements were taken 0, 40 and 80 cm away from the coffee plants, both in the north and south direction. Concomitantly, an adjoining full sunlight coffee system (not intercropped) was also assessed. The measurements included atmospheric parameters (temperature, irradiance, and relative humidity) and vegetative parameters for the coffee plants (leaf area, relative chlorophyll index, length of plagiotropic branches, length of orthotopic branches and number of nodes) in three periods of the year. The intercropped system of Conilon coffee and papaya trees led to a decrease in both irradiance and temperature, and higher means of relative humidity during daytime in all the periods assessed, which contributes to a better environment for coffee cultivation. The shadow provided by papaya trees in the coffee plants contributed to a higher leaf area but did not affect neither the growth of both plagiotropic and orthotopic branches, nor the number of nodes and the etiolation. The intercropped system of Conilon coffee and papaya trees may be potentially used as a farming system to mitigate climate change.

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Nutrients accumulation in plants/fruits varies according to the crop development stage and its quantification is important to determine nutrients exportation for fertilization planning and nutrient balancing. This study determined the accumulation of nutrients in different parts of Piper nigrum 'Bragantina' spikes harvested at two ripening stages (still-green and red-colored spikes). Assessments in separate parts of still-green spikes (fruits and peduncles) as well as in red-colored spikes (grains, flesh and peduncles) were performed. Piper nigrum spikes were harvested, dried, and the parts were thereafter separated for chemical analysis. N and Mn were the macro and micronutrient most accumulated in the fruits of still-green spikes and in the grains of red-colored spikes, while K and B were most accumulated in the other parts of black pepper assessed, regardless of the ripening stage. The process of removing the flesh from the fruits for white pepper production led to a difference in nutrient concentration and accumulation between the fruits of still-green spikes and the grains of red-colored spikes. A significant contribution of nutrient input can be achieved by maintained flesh and peduncles in the crop area, decreasing the dependence of external fertilizers and thus contributing to a more sustainable agriculture.

O acúmulo de nutrients em plantas/frutos variam de acordo com o estádio de desenvolvimento das culturas, sendo que sua quantificação é importante na determinação da exportação de nutrientes para o planejamento da adubação e para o balanceamento de nutrientes. Esse estudo objetivou determinar o acúmulo de nutrientes em diferentes partes dos cachos de Piper nigrum 'Bragantina' colhidos em dois estágios de maturação (coloração da casca verde e coloração da casca vermelha). As avaliações foram feitas separadamente nos cachos de Piper nigrum com coloração verde (fruto e pedúnculo) e vermelha (grão, casca e pedúnculo), em que os cachos foram colhidos, secos e as partes foram separadas para análises químicas. N e Mn foram os macro e micronutrientes mais acumulados nos frutos dos cachos com coloração da casca verde e nos grãos dos cachos com coloração da casca vermelha, enquanto K e B foram mais acumulados em outras partes da planta, independente do estágio de maturação. O processo de removação da casca para produção de pimenta branca levou a uma diferença na concentração e no acúmulo de nutrientes nos frutos de pimenta preta e nos grãos de pimenta branca. Uma contribuição significativa para entrada de nutrientes pode ser obtida se as cascas e pedúnculos forem mantidos na área de cultivo, o que diminui a dependência de fertilização, contribuindo para uma agricultura mais sustentável.

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The determination of nitrogen in plants by techniques that allow a fast diagnosis, based on plant growth characteristics, can be a useful tool for the nutritional management of coffee plants. Thus, this study evaluated growth and yield characteristics of irrigated conilon coffee in response to different nitrogen levels, resulting in the determination of the minimum N levels required to achieve the maximum yield, here called critical levels. The experiment was carried out in Colatina, Espirito Santo, Brazil, on plantations of conilon coffee, clonal variety Emcapa 8111, genotype 02. Six nitrogen levels were applied (0, 110, 220, 440, 880 and 1320 kg N ha-1) and the response in growth and yield characteristics periodically evaluated. There was a positive effect of the increasing N levels on yield, in that the N levels that provided 95% of the maximum yield (137.4 bags ha-1 and 108.5 bags ha-1) in the 2012/2013 and 2013/2014 growing seasons, respectively, were 420.7 and 543.1 kg N ha-1. There was also a positive effect of N levels on the growth characteristics and nitrogen contents, indicating their use as tools for a rapid nutritional diagnosis, with a view to optimizing the nitrogen management in Conilon coffee.

A determinação do nitrogênio nas plantas por técnicas que permitem um diagnóstico rápido, baseado nas características de crescimento das plantas, pode ser uma ferramenta útil para o manejo nutricional das plantas de café. Assim, o objetivo deste estudo foi avaliar as características de crescimento e rendimento do café conilon irrigado em resposta à diferentes níveis de nitrogênio, resultando na determinação dos níveis mínimos de N necessárias para atingir o rendimento máximo, aqui chamadas de níveis críticos. O experimento foi realizado em Colatina, Espírito Santo, Brasil, em plantações de café conilon, variedade clonal Emcapa 8111, genótipo 02. Foram aplicados seis níveis de nitrogênio (0, 110, 220, 440, 880 e 1320 kg N ha-1) e a resposta em características de crescimento e rendimento foi periodicamente avaliada. Houve um efeito positivo do aumento dos níveis de N sobre o rendimento, na medida em que os níveis de N que forneceram 95% do rendimento máximo (137,4 sacos ha-1 e 108,5 sacos ha-1) nas estações de crescimento 2012/2013 e 2013/2014, respectivamente, foram de 420,7 e 543,1 kg de N ha-1. Houve também um efeito positivo dos níveis de N sobre as características de crescimento e conteúdo de nitrogênio, indicando seu uso como ferramentas para um diagnóstico nutricional rápido, com o objetivo de otimizar o manejo de nitrogênio no café Conilon.

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