RESUMO
Proteins have evolved through mutations-amino acid substitutions-since life appeared on Earth, some 109 years ago. The study of these phenomena has been of particular significance because of their impact on protein stability, function, and structure. This study offers a new viewpoint on how the most recent findings in these areas can be used to explore the impact of mutations on protein sequence, stability, and evolvability. Preliminary results indicate that: (1) mutations can be viewed as sensitive probes to identify 'typos' in the amino-acid sequence, and also to assess the resistance of naturally occurring proteins to unwanted sequence alterations; (2) the presence of 'typos' in the amino acid sequence, rather than being an evolutionary obstacle, could promote faster evolvability and, in turn, increase the likelihood of higher protein stability; (3) the mutation site is far more important than the substituted amino acid in terms of the marginal stability changes of the protein, and (4) the unpredictability of protein evolution at the molecular level-by mutations-exists even in the absence of epistasis effects. Finally, the Darwinian concept of evolution "descent with modification" and experimental evidence endorse one of the results of this study, which suggests that some regions of any protein sequence are susceptible to mutations while others are not. This work contributes to our general understanding of protein responses to mutations and may spur significant progress in our efforts to develop methods to accurately forecast changes in protein stability, their propensity for metamorphism, and their ability to evolve.
Assuntos
Evolução Molecular , Mutação , Estabilidade Proteica , Proteínas , Proteínas/genética , Proteínas/química , Proteínas/metabolismo , Sequência de AminoácidosRESUMO
Resumen La actina es una proteína que se polimeriza para formar citoesqueletos y cuya función es estabilizar y dirigir el movimiento de las paredes celulares. Es una de las proteínas más estables, habiendo evolucionado poco a partir de algas y levaduras, y muy poco desde los peces. Aquí analizamos la evolución de la actina usando las teorías modernas de las interacciones de conformación proteína-agua, y cómo estas han evolucionado para optimizar las funciones de la proteína. Llegamos a la conclusión de que el fracaso del análisis filogenético para identificar positivamente la evolución darwiniana de las proteínas ha sido causado por las limitaciones técnicas propias del siglo XX. Estas limitaciones pueden ser superadas mediante el escalamiento termodinámico y el promedio modular ambos llevados a niveles técnicos del siglo XXI. Los resultados para la actina son especialmente llamativos y reflejan estructuras duales estables, globulares y polimerizadas.
Abstract Actin polymerizes to form cytoskeletons which stabilize and direct motion of cellular walls. It is one of the most stable proteins, having evolved little from algae and yeast, and very little from fish. Here we analyze actin evolution using modern theories of water-protein shaping interactions, and how these have evolved to optimize protein functions. We conclude that the failure of phylogenetic analysis to identify positive Darwinian evolution has been caused by 20th century technical limitations. These are overcome using 21st century thermodynamic scaling and modular averaging. The results for actin are especially striking, and reflect dual stable structures, globular and polymerized.