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Introduction: Foodborne infections, which are frequently linked to bacterial contamination, are a serious concern to public health on a global scale. Whether agricultural farming practices help spread genes linked to antibiotic resistance in bacteria associated with humans or animals is a controversial question. Methods: This study applied a long-read Oxford Nanopore MinION-based sequencing to obtain the complete genome sequence of a multi-drug resistant Escherichia coli strain (L1PEag1), isolated from commercial cape gooseberry fruits (Physalis peruviana L.) in Ecuador. Using different genome analysis tools, the serotype, Multi Locus Sequence Typing (MLST), virulence genes, and antimicrobial resistance (AMR) genes of the L1PEag1 isolate were determined. Additionally, in vitro assays were performed to demonstrate functional genes. Results: The complete genome sequence of the L1PEag1 isolate was assembled into a circular chromosome of 4825.722 Kbp and one plasmid of 3.561 Kbp. The L1PEag1 isolate belongs to the B2 phylogroup, sequence type ST1170, and O1:H4 serotype based on in silico genome analysis. The genome contains 4,473 genes, 88 tRNA, 8 5S rRNA, 7 16S rRNA, and 7 23S rRNA. The average GC content is 50.58%. The specific annotation consisted of 4,439 and 3,723 genes annotated with KEEG and COG respectively, 3 intact prophage regions, 23 genomic islands (GIs), and 4 insertion sequences (ISs) of the ISAs1 and IS630 families. The L1PEag1 isolate carries 25 virulence genes, and 4 perfect and 51 strict antibiotic resistant gene (ARG) regions based on VirulenceFinder and RGI annotation. Besides, the in vitro antibiotic profile indicated resistance to kanamycin (K30), azithromycin (AZM15), clindamycin (DA2), novobiocin (NV30), amikacin (AMK30), and other antibiotics. The L1PEag1 isolate was predicted as a human pathogen, matching 464 protein families (0.934 likelihood). Conclusion: Our work emphasizes the necessity of monitoring environmental antibiotic resistance, particularly in commercial settings to contribute to develop early mitigation techniques for dealing with resistance diffusion.

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Antibiotic resistance (ABR) has direct and indirect repercussions on public health and threatens to decrease the therapeutic effect of antibiotic treatments and lead to more infection-related deaths. There are several mechanisms by which ABR can be transferred from one microorganism to another. The risk of transfer is often related to environmental factors. The food supply chain offers conditions where ABR gene transfer can occur by multiple pathways, which generates concerns regarding food safety. This work reviews mechanisms involved in ABR gene transfer, potential transmission routes in the food supply chain, the prevalence of antibiotic residues in food and ABR organisms in processing lines and final products, and implications for public health. Finally, the paper will elaborate on the application of antimicrobial peptides as new alternatives to antibiotics that might countermeasure ABR and is compatible with current food trends.

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Hygiene failures in meat can be identified based on the evaluation of pathogenic microorganisms, which compromise the microbiological quality of food and can transmit food-borne diseases. The aim of the present study was to evaluate the hygienic quality of beef sold at supermarkets, butcher shops and public markets in the city of Campo Grande, state of Mato Grosso do Sul, Brazil, through the phenotypic and genotypic characterization of Salmonella spp. and Shiga toxin-producing Escherichia coli (STEC) as well as the investigation and quantification of Staphylococcus aureus. Seventy-one samples of beef from 17 commercial establishments were evaluated. Isolates were tested for antimicrobial susceptibility using the disk diffusion method recommended by the Clinical & Laboratory Standards Institute. Salmonella was found in 7.04% of the samples and 70.0% of the isolates were sensitive to the antimicrobials tested. A total of 25.35% of the samples were positive for Staphylococcus aureus, with counts ranging from 1.0 x 102 to 4.3 x 104 CFU/g; these isolates exhibited resistance to penicillin (87.5%), tetracycline (18.75%) and chloramphenicol (6.25%). None of the samples was positive for STEC. The detection of these pathogens in food poses a danger to public health, mainly due to the presence of antimicrobial-resistant isolates. These findings underscore the need for good hygiene and manufacturing practices at retail establishments.

As falhas na qualidade higiênico-sanitária da carne podem ser identificadas a partir da avaliação de microrganismos patogênicos que comprometem a qualidade microbiológica do alimento e podem veicular doenças de origem alimentar. O presente estudo objetivou avaliar a qualidade higiênica-sanitária de carnes bovinas comercializadas em supermercados, açougues e mercados públicos da cidade de Campo Grande (Mato Grosso do Sul, Brasil) por meio da pesquisa e caracterização fenotípica e genotípica de Salmonella spp. e Escherichia coli produtora de toxina Shiga (STEC) e pesquisa e contagem de Staphylococcus aureus. Foram avaliadas 71 amostras de carne bovina de 17 estabelecimentos comerciais que foram submetidas a pesquisa de detecção de Salmonella spp., Escherichia coli produtora de toxina Shiga (STEC) e pesquisa e contagem de Staphylococcus aureus. Os isolados obtidos foram submetidos ao perfil de sensibilidade aos antimicrobianos pelo teste de difusão em disco, de acordo com o Clinical & Laboratory Standards Institute (CLSI). Constatou-se a presença de Salmonella em 7,04% das amostras avaliadas, sendo que 70,0% dos isolados foram sensíveis aos antimicrobianos testados. Em relação ao Staphylococcus aureus, 25,35% das amostras foram positivas com contagens variando entre 1,0 x 102 a 4,3 x 104 UFC/g, sendo que os isolados apresentaram resistência para penicilina (62,5%), tetraciclina (18,75%) e cloranfenicol (6,25%). Nenhuma amostra apresentou-se positiva para STEC. A detecção desses patógenos em alimentos representa um perigo a saúde pública, principalmente, devido a presença de isolados resistentes a antimicrobianos. Além disso, ressalta-se a necessidade do emprego das boas práticas de higiene e fabricação nos estabelecimentos varejistas.

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The objective of the present study was to Standardize a Polymerase Chain Reaction (PCR) protocol for the authentication of bovine and buffalo milk, and to detect the presence of Salmonella spp. and Listeria monocytogenes. For this, the target DNA was extracted, mixed, and subjected to a PCR assay. Milk samples were defrauded and experimentally contaminated with microorganisms to assess the detection of target DNA at different times of cultivation, bacterial titers, and concentration of genetic material. In addition, the protocol was tested with DNA extracted directly from food, without a pre-enrichment step. The proposed quadruplex PCR showed good accuracy in identifying target DNA sequences. It was possible to simultaneously identify all DNA sequences at the time of inoculation (0h), when the samples were contaminated with 2 CFU/250mL and with 6h of culture when the initial inoculum was 1 CFU/250mL. It was also possible to directly detect DNA sequences from the food when it was inoculated with 3 CFU/mL bacteria. Thus, the proposed methodology showed satisfactory performance, optimization of the analysis time, and a potential for the detection of microorganisms at low titers, which can be used for the detection of fraud and contamination.

O objetivo do presente estudo foi padronizar um protocolo de reação em cadeia da polimerase (PCR) para a autenticação de leite bovino e bubalino e a detecção da presença de Salmonella spp. e Listeria monocytogenes. Para isso, o DNA-alvo foi extraído, misturado e submetido ao ensaio de PCR. Amostras de leite foram fraudadas e contaminadas experimentalmente com os micro-organismos, para se avaliar a detecção do DNA-alvo em diferentes tempos de cultivo, os títulos bacterianos e a concentração de material genético. Além disso, o protocolo foi testado com DNA extraído diretamente do alimento, sem a etapa de pré-enriquecimento. A PCR quadriplex proposta mostrou boa precisão na identificação de sequências de DNA-alvo. Foi possível identificar simultaneamente todas as sequências de DNA no momento da inoculação (0h), quando as amostras estavam contaminadas com 2 UFC/250mL, e com seis horas de cultura, quando o inóculo inicial foi de 1 UFC/250mL. Também foi possível detectar diretamente as sequências de DNA do alimento quando este foi inoculado com 3 UFC/mL de bactérias. Dessa forma, a metodologia proposta apresentou desempenho satisfatório, otimização do tempo de análise e potencial para detecção de micro-organismos em baixos títulos, podendo ser utilizada para detecção de fraude e contaminação.

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Carvacrol has been recognized as an efficient growth inhibitor of food pathogens. However, carvacrol oil is poorly water-soluble and can be oxidized, decomposed or evaporated when exposed to the air, light, or heat. To overcome these limitations, a carvacrol nanoemulsion was developed and its antimicrobial activity against food pathogens evaluated in this study. The nanoemulsion containing 3% carvacrol oil, 9% surfactants (HLB 11) and 88% water, presented good stability over a period of 90 days. In general, the carvacrol nanoemulsion (MIC: 256 µg ml-1 for E. coli and Salmonella spp., 128 µg ml-1 for Staphylococcus aureus and Pseudomonas aeruginosa) exhibited improved antimicrobial activity compared to the free oil. The carvacrol nanoemulsion additionally displayed bactericidal activity against Escherichia coli, P. aeruginosa and Salmonella spp. Therefore, the results of this study indicated that carvacrol oil nanoemulsions can potentially be incorporated into food formulations, wherein their efficacy for the prevention and control of microbial growth could be evaluated.

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ABSTRACT: Buffalo milk is rich in nutrients and can serve as a substrate for the proliferation of microorganisms. Thus, the objective of the present study was to evaluate the growth kinetics of Salmonella Typhimurium and Listeria monocytogenes in buffalo milk under different processing and storage conditions. Samples of raw and pasteurized milk were inoculated with 1 CFU of each bacterium, separately and together, per 25 mL. After contamination, samples were stored at 8 °C or 37 °C, and bacterial counts were performed at 24, 48, and 168 h. In addition, the accompanying microbiota growth, pH, and the effect of these variables on the growth kinetics of microorganisms were monitored. The pathogens tested were able to proliferate under most conditions tested, reaching high titers throughout the experimental period. At 37 °C, there was a decrease in pH and an increase in the accompanying microbiota that interfered with the microbial growth curve. It was also observed that pasteurized milk subjected to 8 °C provided better conditions for the multiplication of bacteria. Therefore, it was concluded that care throughout the production chain, storage, and commercialization of milk must be adopted to guarantee the microbiological safety of this food.

RESUMO: O leite bubalino é rico em nutrientes e pode servir de substrato para a proliferação de micro-organismos. Assim, o objetivo do presente estudo foi avaliar a cinética de crescimento de Salmonella Typhimurium e Listeria monocytogenes em leite bubalino, em diferentes condições de processamento e armazenamento. Para isso, utilizaram-se amostras de leite cru e pasteurizado, que foram inoculadas com 1 UFC/25 mL de cada bactéria separadamente e em conjunto. Após a contaminação, as amostras foram armazenadas nas temperaturas de 8 ºC e 37 ºC e realizadas contagens bacterianas em 24, 48 e 168h. Além disso, foi acompanhado o crescimento da microbiota acompanhante, o pH e o efeito dessas variáveis sobre a cinética de crescimento dos micro-organismos. Os patógenos testados conseguiram se proliferar na maioria das condições testadas, atingindo altos títulos durante todo o período experimental. Na temperatura de 37 ºC, houve uma diminuição do pH e um aumento da microbiota acompanhante, o que interferiu na curva de crescimento microbiana. Observou-se também que o leite pasteurizado e submetido a 8 ºC possibilitou melhores condições para a multiplicação das bactérias. Sendo assim, concluiu-se que cuidados durante toda a cadeia de produção, armazenamento e comercialização do leite devem ser adotados para garantir a segurança microbiológica desse alimento.

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Buffalo milk is rich in nutrients and can serve as a substrate for the proliferation of microorganisms. Thus, the objective of the present study was to evaluate the growth kinetics of Salmonella Typhimurium and Listeria monocytogenes in buffalo milk under different processing and storage conditions. Samples of raw and pasteurized milk were inoculated with 1 CFU of each bacterium, separately and together, per 25 mL. After contamination, samples were stored at 8 °C or 37 °C, and bacterial counts were performed at 24, 48, and 168 h. In addition, the accompanying microbiota growth, pH, and the effect of these variables on the growth kinetics of microorganisms were monitored. The pathogens tested were able to proliferate under most conditions tested, reaching high titers throughout the experimental period. At 37 °C, there was a decrease in pH and an increase in the accompanying microbiota that interfered with the microbial growth curve. It was also observed that pasteurized milk subjected to 8 °C provided better conditions for the multiplication of bacteria. Therefore, it was concluded that care throughout the production chain, storage, and commercialization of milk must be adopted to guarantee the microbiological safety of this food.

O leite bubalino é rico em nutrientes e pode servir de substrato para a proliferação de micro-organismos. Assim, o objetivo do presente estudo foi avaliar a cinética de crescimento de Salmonella Typhimurium e Listeria monocytogenes em leite bubalino, em diferentes condições de processamento e armazenamento. Para isso, utilizaram-se amostras de leite cru e pasteurizado, que foram inoculadas com 1 UFC/25 mL de cada bactéria separadamente e em conjunto. Após a contaminação, as amostras foram armazenadas nas temperaturas de 8 ºC e 37 ºC e realizadas contagens bacterianas em 24, 48 e 168h. Além disso, foi acompanhado o crescimento da microbiota acompanhante, o pH e o efeito dessas variáveis sobre a cinética de crescimento dos micro-organismos. Os patógenos testados conseguiram se proliferar na maioria das condições testadas, atingindo altos títulos durante todo o período experimental. Na temperatura de 37 ºC, houve uma diminuição do pH e um aumento da microbiota acompanhante, o que interferiu na curva de crescimento microbiana. Observou-se também que o leite pasteurizado e submetido a 8 ºC possibilitou melhores condições para a multiplicação das bactérias. Sendo assim, concluiu-se que cuidados durante toda a cadeia de produção, armazenamento e comercialização do leite devem ser adotados para garantir a segurança microbiológica desse alimento.

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Buffalo milk is rich in nutrients and can serve as a substrate for the proliferation of microorganisms. Thus, the objective of the present study was to evaluate the growth kinetics of Salmonella Typhimurium and Listeria monocytogenes in buffalo milk under different processing and storage conditions. Samples of raw and pasteurized milk were inoculated with 1 CFU of each bacterium, separately and together, per 25 mL. After contamination, samples were stored at 8 °C or 37 °C, and bacterial counts were performed at 24, 48, and 168 h. In addition, the accompanying microbiota growth, pH, and the effect of these variables on the growth kinetics of microorganisms were monitored. The pathogens tested were able to proliferate under most conditions tested, reaching high titers throughout the experimental period. At 37 °C, there was a decrease in pH and an increase in the accompanying microbiota that interfered with the microbial growth curve. It was also observed that pasteurized milk subjected to 8 °C provided better conditions for the multiplication of bacteria. Therefore, it was concluded that care throughout the production chain, storage, and commercialization of milk must be adopted to guarantee the microbiological safety of this food.(AU)

O leite bubalino é rico em nutrientes e pode servir de substrato para a proliferação de micro-organismos. Assim, o objetivo do presente estudo foi avaliar a cinética de crescimento de Salmonella Typhimurium e Listeria monocytogenes em leite bubalino, em diferentes condições de processamento e armazenamento. Para isso, utilizaram-se amostras de leite cru e pasteurizado, que foram inoculadas com 1 UFC/25 mL de cada bactéria separadamente e em conjunto. Após a contaminação, as amostras foram armazenadas nas temperaturas de 8 ºC e 37 ºC e realizadas contagens bacterianas em 24, 48 e 168h. Além disso, foi acompanhado o crescimento da microbiota acompanhante, o pH e o efeito dessas variáveis sobre a cinética de crescimento dos micro-organismos. Os patógenos testados conseguiram se proliferar na maioria das condições testadas, atingindo altos títulos durante todo o período experimental. Na temperatura de 37 ºC, houve uma diminuição do pH e um aumento da microbiota acompanhante, o que interferiu na curva de crescimento microbiana. Observou-se também que o leite pasteurizado e submetido a 8 ºC possibilitou melhores condições para a multiplicação das bactérias. Sendo assim, concluiu-se que cuidados durante toda a cadeia de produção, armazenamento e comercialização do leite devem ser adotados para garantir a segurança microbiológica desse alimento.(AU)

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Dulce de leche is the product obtained by concentrating milk and adding sucrose. This sweet can be contaminated by improper practices during the manufacturing process, or in the consumer’s home. If manipulation is not performed in a hygienic manner the dulce de leche can be a vehicle of pathogenic bacteria, like some strains of Escherichia coli, to man. The aim of this paper was evaluate the survival capacity and the fate of Escherichia coli Enteroinvasive, Enteropathogenic and Enterohemorrhagic in pasty dulce de leche. Aliquots of this sweet were experimentally contaminated with these pathogenic microorganisms at 102 bacterial cells per gram, and later analyzed to evaluate microorganism count after storage for 0, 1, 2, 3, 5, 10, 20 and 30 days. EIEC could be recovered up to 20 days post inoculation in one of the reps, count EIEC on the third day reached 1,500 MPN per g. The strains of EPEC and EHEC, did not show growth, as EIEC, therefore, seem to be more sensitive to the adversities of the medium. The survival of pathogens for long periods in this food highlights the need for strict care in the manufacture and handling of dulce de leche.

O doce de leite é um alimento obtido por concentração do leite adicionado de sacarose. Este alimento pode ser contaminado por práticas inadequadas durante o processamento. Caso a manipulação não seja realizada de maneira higiênica o alimento pode ser veículo de bactérias patogênicas, como algumas cepas de Escherichia coli, para o homem. O objetivo desse trabalho foi avaliar a capacidade de sobrevivência e o comportamento de EIEC, EPEC e EHEC em doce de leite pastoso. Alíquotas deste doce foram experimentalmente contaminadas com esse micro-organismo patogênico na concentração 102 células por grama e posteriormente analisados para avaliar a contagem bacteriana após 0, 1, 2, 3, 5, 10, 20 e 30 dias de estocagem. EIEC pôde ser recuperada até 20 dias após a inoculação em duas das três repetições. Em uma das repetições, a contagem de EIEC no terceiro dia atingiu 1.500 NMP por g. As cepas de EPEC e EHEC, não apresentaram crescimento, como EIEC, portanto, parecerem ser mais sensíveis às adversidades do meio. A sobrevivência desses patógenos durante dias neste alimento evidencia a necessidade de rigorosos cuidados na fabricação e manuseio do doce de leite pastoso.

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