RESUMO
BACKGROUND: In this study, the prevalence of different types of mucopolysaccharidoses (MPS) was estimated based on data from the exome aggregation consortium (ExAC) and the genome aggregation database (gnomAD). The population-based allele frequencies were used to identify potential disease-causing variants on each gene related to MPS I to IX (except MPS II). METHODS: We evaluated the canonical transcripts and excluded homozygous, intronic, 3', and 5' UTR variants. Frameshift and in-frame insertions and deletions were evaluated using the SIFT Indel tool. Splice variants were evaluated using SpliceAI and Human Splice Finder 3.0 (HSF). Loss-of-function single nucleotide variants in coding regions were classified as potentially pathogenic, while synonymous variants outside the exon-intron boundaries were deemed non-pathogenic. Missense variants were evaluated by five in silico prediction tools, and only those predicted to be damaging by at least three different algorithms were considered disease-causing. RESULTS: The combined frequencies of selected variants (ranged from 127 in GNS to 259 in IDUA) were used to calculate prevalence based on Hardy-Weinberg's equilibrium. The maximum estimated prevalence ranged from 0.46 per 100,000 for MPSIIID to 7.1 per 100,000 for MPS I. Overall, the estimated prevalence of all types of MPS was higher than what has been published in the literature. This difference may be due to misdiagnoses and/or underdiagnoses, especially of the attenuated forms of MPS. However, overestimation of the number of disease-causing variants by in silico predictors cannot be ruled out. Even so, the disease prevalences are similar to those reported in diagnosis-based prevalence studies. CONCLUSION: We report on an approach to estimate the prevalence of different types of MPS based on publicly available population-based genomic data, which may help health systems to be better prepared to deal with these conditions and provide support to initiatives on diagnosis and management of MPS.
Assuntos
Mucopolissacaridoses , Mucopolissacaridose I , Exoma , Humanos , Mucopolissacaridoses/epidemiologia , Mucopolissacaridoses/genética , Mutação , PrevalênciaRESUMO
Several studies have been published on the frequency of the mucopolysaccharidoses (MPS) in different countries. The objective of the present study was to estimate the birth prevalence (BP) of MPS in Brazil. MPS diagnosis registered at MPS-Brazil Network and in Instituto Vidas Raras were reviewed. BP was estimated by (a) the number of registered patients born between 1994 and 2015 was divided by the number of live births (LBs), and (b) a sample of 1,000 healthy individuals was tested for the most frequent variant in IDUA gene in MPS I (p.Trp402Ter) to estimate the frequency of heterozygosity and homozygosity. (a) The BP based on total number of LBs was (cases per 100,000 LBs): MPS overall: 1.25; MPS I: 0.24; MPS II: 0.37; MPS III: 0.21; MPS IV: 0.14; MPS VI: 0.28; MPS VII: 0.02. (b) The overall frequency of p.Trp402Ter was 0.002. Considering the frequency of heterozygotes for the p.Trp402Ter IDUA variant in the RS state, the frequency of this variant among MPS I patients and the relative frequency of the different MPSs, we estimated the birth prevalence of MPS in total and of each MPS type, as follows: MPS overall: 4.62; MPS I: 0.95; MPS II: 1.32; MPS III: 0.56; MPS IV: 0.57; MPS VI: 1.02; MPS VII: 0.05. This study provided original data about BP and relative frequency of the MPS types, in Brazil, based on the frequency of the commonest IDUA pathogenic variant and in the records of two large patient databases.
Assuntos
Iduronidase/genética , Mucopolissacaridoses/genética , Brasil/epidemiologia , Feminino , Humanos , Iduronidase/sangue , Nascido Vivo , Masculino , Mucopolissacaridoses/sangue , Mucopolissacaridoses/epidemiologia , Mucopolissacaridoses/patologia , Mucopolissacaridose I/sangue , Mucopolissacaridose I/epidemiologia , Mucopolissacaridose I/genética , Mucopolissacaridose II/sangue , Mucopolissacaridose II/epidemiologia , Mucopolissacaridose II/genética , Mucopolissacaridose III/sangue , Mucopolissacaridose III/epidemiologia , Mucopolissacaridose III/genética , Mucopolissacaridose VI/sangue , Mucopolissacaridose VI/epidemiologia , Mucopolissacaridose VI/genética , Mutação/genéticaRESUMO
Introdução: Mucopolissacaridose (MPS) é um conjunto de doenças raras causadas pela deficiência de enzimas lisossômicas levando ao acúmulo de glicosaminoglicanos (GAG) em órgãos e tecidos, responsáveis pelo quadro clínico multissistêmico, crônico e progressivo. O comprometimento auditivo é frequente. Objetivo: Avaliar manifestações auditivas de pacientes com MPS. Metodologia: Estudo descritivo, série de casos do comprometimento auditivo de pacientes com MPS. Foi realizada avaliação retrospectiva através de revisão de prontuário e avaliação prospectiva de dezembro de 2012 a outubro de 2014. Foram analisados a primeira e a última avaliação otorrinolaringológica (ORL) e audiológica realizada. Resultados: A principal queixa auditiva foi a hipoacusia. Aperdaauditiva estava presente em quase todos os pacientes, sendo que a perda auditiva condutiva foi a mais frequente, especialmente nos pacientes com MPS VI. Conclusão: A perda auditiva é muito frequente em pacientes com MPS, devendo o acompanhamento audiológico ser realizado precocemente.
Introduction: Mucopolysaccharidosis (MPS) is a set of rare diseases caused by deficiency of lysosomal enzymes leading to accumulation of glicosaminoglicanos (GAG) in tissues and organs responsible for the multisystemic clinical, chronic and progressive symptons. Objective: Todescribe the profile of otorhinolaryngological clinical examination and audiology tests of patients with MPS disease. Methods:Study of case series. The evaluation was performed, at the beginning, in 31 patients with MPS I, II, IIIA, IV and VI. Results: The most common hearing complaint was hearing loss and it was confirmed by audiology tests in almost 100% of patients, mostly with condutive hearing loss. Conclusions: It is important to evaluate the complaints, physical examination and audiology tests in MPS disease. Otorhinolaryngologist should be part of professional group that follow these patients in order to better monitor their hearing and provide early hearing rehabilitation.
Assuntos
Humanos , Audição/fisiologia , Audição/imunologia , Mucopolissacaridoses/diagnóstico , Mucopolissacaridoses/epidemiologia , Mucopolissacaridoses/imunologia , Mucopolissacaridoses/metabolismo , Mucopolissacaridoses/patologia , Perda Auditiva/complicações , Perda Auditiva/diagnóstico , Perda Auditiva/patologiaRESUMO
Introducción. Las mucopolisacaridosis son enfermedades poco frecuentes de depósito lisosómico de glucosaminoglucanos, con datos variables sobre su incidencia en diferentes países a nivel mundial. En Latinoamérica hay reportes de frecuencias en Brasil, pero en Colombia la información es escasa. Objetivos. Estimar las frecuencias de las mucopolisacaridosis mediante un estudio retrospectivo en los departamentos de Cundinamarca y Boyacá, y estimar la agregación espacial de los casos en estos mismos departamentos. Materiales y métodos. Se revisaron los registros de pacientes de diferentes instituciones de referencia para enfermedades genéticas, así como los registros de nacimientos vivos entre 1998 y 2007. Con base en ellos, se estimaron las frecuencias para cada tipo de mucopolisacaridosis. Se analizó la agregación espacial de los casos utilizando el programa SaTScan™. Resultados. La frecuencia combinada para todas las mucopolisacaridosis fue de 1,98 casos por 100.000 nacidos vivos. La mayor frecuencia fue para la de tipo IV, con 0,68 casos por 100.000 nacidos vivos, mientras que la III fue la menor, con 0,17 casos. Se encontraron tres posibles áreas de agregación espacial para las mucopolisacaridosis I, III y IV. Conclusión. La frecuencia combinada para todas las mucopolisacaridosis se encuentra dentro de los rangos reportados en la literatura científica, siendo la de tipo IV la más frecuente y la de tipo VII la menos frecuente. Aunque los datos aquí reportados podrían corresponder a un subregistro, dadas las dificultades inherentes a la recolección de la información en nuestro país, consideramos que son un estimativo válido de las frecuencias de estas enfermedades.
Introduction. Mucopolysaccharidoses are a group of infrequent disorders caused by the lysosomal deposit of glycosaminoglycans. Its incidence is quite variable among thecountries where it has been documented. In Brazil, disorder frequencies have been reported, but in Colombia information on them is scarce. Objectives. The frequency and spatial aggregations of the mucopolysaccharidoses were estimated by a retrospective study in two central Colombian provinces. Materials and methods. The records of patients and live newborns between 1998-2007 were reviewed from several reference institutions for genetic diseases. From these records, the frequencies for each mucopolysaccharidosis were estimated. The spatial aggregation of the cases was analyzed using the SaTScan software. Results. The combined frequency for all the mucopolysaccharidoses was 1.98 cases per 100,000 live newborns. MPS IV had the highest frequency with 0.68 cases per 100,000 live newborns and MPS III showed a lower frequency of 0.17/100,000. Three spatial aggregation areas were indicated for MPS I, MPS III and MPS IV. Conclusion. The combined frequency for all the mucopolysaccharidoses has been reported, with type IV the most frequent and the type VII in second place. The data herein constitute a record subset and, in spite of the difficulties inherent to the data retrieval in Colombia, they are a valid estimate of the frequencies of these diseases in central Colombia.
Assuntos
Humanos , Mucopolissacaridoses/epidemiologia , Análise por Conglomerados , Colômbia/epidemiologia , Incidência , Mucopolissacaridoses/classificação , Sistema de Registros , Estudos Retrospectivos , Centros de Atenção Terciária/estatística & dados numéricosRESUMO
INTRODUCTION: Mucopolysaccharidoses are a group of infrequent disorders caused by the lysosomal deposit of glycosaminoglycans. Its incidence is quite variable among the countries where it has been documented. In Brazil, disorder frequencies have been reported, but in Colombia information on them is scarce. OBJECTIVES: The frequency and spatial aggregations of the mucopolysaccharidoses were estimated by a retrospective study in two central Colombian provinces. MATERIALS AND METHODS: The records of patients and live newborns between 1998-2007 were reviewed from several reference institutions for genetic diseases. From these records, the frequencies for each mucopolysaccharidosis were estimated. The spatial aggregation of the cases was analyzed using the SaTScan software. RESULTS: The combined frequency for all the mucopolysaccharidoses was 1.98 cases per 100,000 live newborns. MPS IV had the highest frequency with 0.68 cases per 100,000 live newborns and MPS III showed a lower frequency of 0.17/100,000. Three spatial aggregation areas were indicated for MPS I, MPS III and MPS IV. CONCLUSION: The combined frequency for all the mucopolysaccharidoses has been reported, with type IV the most frequent and the type VII in second place. The data herein constitute a record subset and, in spite of the difficulties inherent to the data retrieval in Colombia, they are a valid estimate of the frequencies of these diseases in central Colombia.
Assuntos
Mucopolissacaridoses/epidemiologia , Análise por Conglomerados , Colômbia/epidemiologia , Humanos , Incidência , Mucopolissacaridoses/classificação , Sistema de Registros , Estudos Retrospectivos , Centros de Atenção Terciária/estatística & dados numéricosAssuntos
Mucopolissacaridoses/epidemiologia , Criança , Feminino , Hospitais Pediátricos , Humanos , Masculino , MéxicoRESUMO
INTRODUCTION: Mucopolysaccharidoses (MPS), which belong to the family of inborn errors of metabolism, are characterised by their severe clinical manifestations (skeletal, neurological and visceral) and a chronic, progressive course leading to death at early stages of life. AIM. To accomplish an enzymatic diagnosis and characterise MPS within the Cuban population. SUBJECTS AND METHODS: A total of 664 patients with a clinical suspicion of some type of MPS were referred to the Institute of Neurology and Neurosurgery in Havana in order to determine a possible enzymatic deficiency and to classify the type of MPS involved in each case. Enzymatic determinations of alpha-L-iduronidasa, alpha-N-acetylglucosaminidase, beta-galactosidase, arylsulphatase B and beta-glucuronidase were performed in leukocyte homogenate for MPS I, IIIB, IVB, VI and VII, respectively, in patients, parents and controls. RESULTS. In all, 42 cases of MPS were diagnosed: MPS I (62%, n = 26), MPS VI (29%, n = 12), MPS IIIB (7%, n = 3) and MPS IVB (2%, n = 1). No patients with MPS VII were identified. The patients diagnosed with MPS were of both sexes and ages ranged between 4 months and 10 years. The specific activity of the enzymes that were studied was deficient in patients with respect to parents and controls. The percentage of activity was lower in patients compared to parents. CONCLUSIONS: These studies made it possible to evaluate the enzymatic deficiencies and to establish the diagnosis of MPS I, MPS IIIB, MPS IVB, MPS VI and MPS VII in the Cuban population.