RESUMO
Several economically important crops are susceptible to root-knot nematode (RKNs). Meloidogyne incognita and M. javanica are the two most reported species from the RKN complex, causing damage to several crops worldwide. The successful outcome of the Meloidogyne-plant interaction is associated with molecular factors secreted by the nematode to suppress the plant's immune response and promote nematode parasitism. In contrast, several plant factors are associated with defense against nematode infection. In this study, we identified and characterized the specific interaction of Minc00344 and Mj-NULG1a effectors with soybean GmHub10 (Glyma.19G008200) protein in vitro and in vivo. An Arabidopsis thaliana T-DNA mutant of AtHub10 (AT3G27960, an orthologous gene of GmHub10) showed higher susceptibility to M. incognita. Thus, since soybean and A. thaliana Hub10 proteins are involved in pollen tube growth and indirect activation of the defense response, our data suggest that effector-Hub10 interactions could be associated with an increase in plant susceptibility. These findings indicate the potential of these effector proteins to develop new biotechnological tools based on RNA interference and the overexpression of engineered Hub10 proteins for the efficient management of RKN in crops.
Assuntos
Glycine max/efeitos dos fármacos , Glycine max/parasitologia , Doenças das Plantas/parasitologia , Tylenchoidea/patogenicidade , Animais , Arabidopsis , Interações Hospedeiro-Parasita , Fenótipo , Filogenia , Domínios e Motivos de Interação entre Proteínas , Glycine max/classificação , Tylenchoidea/classificação , Tylenchoidea/efeitos dos fármacos , Tylenchoidea/genéticaRESUMO
Plant parasitic nematodes reduce the production of agricultural crops. Species diagnosis is essential to predict losses, determine economic damage levels and develop integrated pest management programs. DNA extraction techniques need to be improved for precise and rapid molecular diagnosis of nematodes. The objective of the present study was to evaluate the efficiency of DNA extraction and amplification by PCR, cost and execution time by Chelex, Worm Lysis Buffer Method (WLB), Holterman Lysis Buffer Method (HLB) and FastDNA methods for nematodes of the Meloidogyne genus. The qualitative and quantitative efficiency of DNA extraction varied between methods. The band size of the amplified PCR product with WLB, Chelex and HLB methods was 590â¯bp. Extraction with the FastDNA is not recommended for DNA extraction from nematodes because it results in a low DNA concentration without bands in PCR amplification, besides presenting high cost. The efficiency of the WLB method to extracting DNA from Meloidogyne javanica was greater, ensuring a higher concentration and purity of the extracted material and guaranteeing lower costs and greater ease of PCR amplification.
Assuntos
Genoma de Protozoário/genética , Tipagem Molecular/métodos , Técnicas de Amplificação de Ácido Nucleico/métodos , Tylenchoidea/classificação , Tylenchoidea/genética , Animais , Produtos Agrícolas/parasitologia , Tipagem Molecular/economia , Técnicas de Amplificação de Ácido Nucleico/economia , Doenças das Plantas/parasitologia , Raízes de Plantas/parasitologia , Reação em Cadeia da Polimerase/economia , Reação em Cadeia da Polimerase/métodosRESUMO
Coffee yields are adversely affected by plant-parasitic nematodes and the pathogens are largely underreported because a simple and reliable identification method is not available. We describe a polymerase chain reaction-based approach to rapidly detect and quantify the major Pratylenchus and Meloidogyne nematode species that are capable of parasitizing coffee. The procedure was applied to soil samples obtained from a number of coffee farms in Brazil, Vietnam, and Indonesia to assess the prevalence of these species associated both with coffee (Coffea arabica and C. canephora) and its intercropped species Musa acuminata (banana) and Piper nigrum (black pepper). Pratylenchus coffeae and P. brachyurus were associated with coffee in all three countries but there were distinct profiles of Meloidogyne spp. Meloidogyne incognita, M. exigua, and M. paranaensis were identified in samples from Brazil and M. incognita and M. hapla were detected around the roots of coffee in Vietnam. No Meloidogyne spp. were detected in samples from Indonesia. There was a high abundance of Meloidogyne spp. in soil samples in which Pratylenchus spp. were low or not detected, suggesting that the success of one genus may deter another. Meloidogyne spp. in Vietnam and Pratylenchus spp. in Indonesia were more numerous around intercropped plants than in association with coffee. The data suggest a widespread but differential nematode problem associated with coffee production across the regions studied. The issue is compounded by the current choice of intercrops that support large nematode populations. Wider application of the approach would elucidate the true global scale of the nematode problem and the cost to coffee production. [Formula: see text] Copyright © 2018 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .
Assuntos
Coffea/microbiologia , Doenças das Plantas/parasitologia , Tylenchoidea/classificação , Animais , Brasil , Indonésia , Prevalência , VietnãRESUMO
The accurate identification of root-knot nematode (RKN) species (Meloidogyne spp.) is essential for implementing management strategies. Methods based on the morphology of adults, isozymes phenotypes and DNA analysis can be used for the diagnosis of RKN. Traditionally, RKN species are identified by the analysis of the perineal patterns and esterase phenotypes. For both procedures, mature females are required. Over the last few decades, accurate and rapid molecular techniques have been validated for RKN diagnosis, including eggs, juveniles and adults as DNA sources. Here, we emphasized the methods used for diagnosis of RKN, including emerging molecular techniques, focusing on the major species reported in Brazil.(AU)
A identificação acurada de espécies do nematoide das galhas (NG) (Meloidogyne spp.) é essencial para a implementação de estratégias de manejo. Métodos baseados na morfologia de adultos, fenótipos de isoenzimas e análise de DNA podem ser usados para a diagnose do NG. Tradicionalmente, as espécies de NG são identificadas pela análise do padrão perineal e fenótipos de esterase. Em ambos os procedimentos, fêmeas maduras são necessárias. Nas últimas décadas, técnicas moleculares acuradas e rápidas têm sido validadas para a diagnose de NG, incluindo ovos, juvenis e adultos como fontes de DNA. Aqui, nós destacamos os métodos usados para a diagnose de NG, incluindo técnicas moleculares emergentes, focando nas principais espécies encontradas no Brasil.(AU)
Assuntos
Nematoides/classificação , Nematoides/genética , Tylenchoidea/classificação , Esterases , Isoenzimas , Períneo/anatomia & histologiaRESUMO
The golden cyst nematode (Globodera rostochiensis), native to South America, has been introduced in many parts of the world, including Europe and North America. Recently, it was found for the first time in the province of Quebec, Canada in the locality of St. Amable near Montreal. To date, very few studies have examined the population genetics of this pest. Consequently, there is a lack of knowledge about the genetic structure and evolution of this nematode. In this study, twelve new microsatellite markers were developed in order to explore these questions. These markers were used to genotype fifteen populations originating from different regions of the world, including five from Canada. Within populations, the highest genetic diversity was consistently observed in the populations from Bolivia, the postulated region of origin of the golden nematode, and the lowest in populations from British Columbia (Canada) and New York (USA). The two Quebec populations were very similar to each other and to the population found in Newfoundland, but surprisingly, they were significantly different from three other North American populations including those from New York and British Columbia. Based on our results, we conclude that the golden cyst nematode has been introduced in North America at least twice from distinct regions of the world.
Assuntos
Variação Genética , Estágios do Ciclo de Vida/genética , Filogenia , Tylenchoidea/genética , Animais , Bolívia , Genética Populacional , Genótipo , Espécies Introduzidas , Repetições de Microssatélites , New York , Fenótipo , Filogeografia , Doenças das Plantas/parasitologia , Quebeque , Análise de Sequência de DNA , Solanum tuberosum/parasitologia , Tylenchoidea/classificaçãoRESUMO
Recombination is typically assumed to be absent in animal mitochondrial genomes (mtDNA). However, the maternal mode of inheritance means that recombinant products are indistinguishable from their progenitor molecules. The majority of studies of mtDNA recombination assess past recombination events, where patterns of recombination are inferred by comparing the mtDNA of different individuals. Few studies assess contemporary mtDNA recombination, where recombinant molecules are observed as direct mosaics of known progenitor molecules. Here we use the potato cyst nematode, Globodera pallida, to investigate past and contemporary recombination. Past recombination was assessed within and between populations of G. pallida, and contemporary recombination was assessed in the progeny of experimental crosses of these populations. Breeding of genetically divergent organisms may cause paternal mtDNA leakage, resulting in heteroplasmy and facilitating the detection of recombination. To assess contemporary recombination we looked for evidence of recombination between the mtDNA of the parental populations within the mtDNA of progeny. Past recombination was detected between a South American population and several UK populations of G. pallida, as well as between two South American populations. This suggests that these populations may have interbred, paternal mtDNA leakage occurred, and the mtDNA of these populations subsequently recombined. This evidence challenges two dogmas of animal mtDNA evolution; no recombination and maternal inheritance. No contemporary recombination between the parental populations was detected in the progeny of the experimental crosses. This supports current arguments that mtDNA recombination events are rare. More sensitive detection methods may be required to adequately assess contemporary mtDNA recombination in animals.
Assuntos
DNA Mitocondrial/genética , Recombinação Genética , Solanum tuberosum/parasitologia , Tylenchoidea/genética , Animais , Sequência de Bases , Biodiversidade , Cruzamentos Genéticos , Feminino , Variação Genética , Genética Populacional , Genoma Mitocondrial/genética , Masculino , Dados de Sequência Molecular , Filogenia , Homologia de Sequência do Ácido Nucleico , América do Sul , Tylenchoidea/classificação , Tylenchoidea/crescimento & desenvolvimento , Reino UnidoRESUMO
Peruvian potato cyst nematode populations were analysed to assess both their inter- and intraspecific similarities. ITS--RFLP and two satellite DNA sequences were used as taxonomic tools. Both techniques have confirmed that the Peruvian populations have as their closest relatives the European Globodera pallida, despite the detection of clear differences that prevents us from assigning these South American populations unambiguously to any Globodera species. A more precise study of the variability of these Peruvian populations was investigated and they were compared with the imported European populations using protein (2-DGE) and DNA (RAPD) datasets. The clear distinction between the Peruvian and the European populations was confirmed and, inside each group, no correlation was found between the pathotype classification and the observed clustering of the populations. Surprisingly, while RAPDs revealed a higher variability in the Peruvian group than in the European one, some characteristic proteins were found by 2-DGE in some European populations, whereas it was impossible to find any in the Peruvian populations. It is concluded that the primary founders of the European populations may have an origin other than that of the Peruvian populations involved in this study.
Assuntos
Pool Gênico , Genes de Helmintos , Variação Genética , Tylenchoidea/classificação , Tylenchoidea/genética , Animais , Sequência de Bases , Impressões Digitais de DNA , DNA de Helmintos/genética , DNA de Helmintos/isolamento & purificação , DNA Espaçador Ribossômico/genética , DNA Satélite/genética , DNA Satélite/isolamento & purificação , Eletroforese em Gel Bidimensional , Europa (Continente) , Genes de RNAr , Proteínas de Helminto/análise , Dados de Sequência Molecular , Peru , Polimorfismo de Fragmento de Restrição , Técnica de Amplificação ao Acaso de DNA Polimórfico , Solanum tuberosum/parasitologia , Especificidade da EspécieRESUMO
The cuticle is a major barrier prohibiting the infection of nematodes against micro-organisms. The attachment of bacterial spores of the nematode hyperparasite Pasteuria penetrans (PP1) to field populations of root-knot nematodes (RKN, Meloidogyne spp.) from Burkino Faso, Ecuador, Greece, Malawi, Senegal and Trinidad and Tobago were assayed in standard attachment tests. The attachment of spore population PP1 to different field populations of root-knot nematode showed that the rates of attachment differed between countries. Similar tests were also undertaken on P. penetrans spores from these countries against 2 species of RKN, M. incognita and M. arenaria. The results showed a high degree of variability in spore attachment with no clear distinction between the 2 species of nematode. It has been hypothesized that Pasteuria spore attachment is linked to nematode species designations and this study clearly shows that this is not the case. Further tests showed that variation in spore attachment was not linked to nematode phylogeny. The results therefore beg the question of how do parthenogenetic root-knot nematodes maintain cuticle variability in the face of such an aggressive hyperparasite.